Hb_057451_040

Information

Type -
Description -
Location Contig57451: 24348-28734
Sequence    

Annotation

kegg
ID tcc:TCM_028292
description DNA/RNA polymerases superfamily protein
nr
ID XP_007023888.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061G9E7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057451_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000268_100 0.1791631562 - - -
3 Hb_011478_010 0.1831727786 - - -
4 Hb_003711_030 0.185914414 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
5 Hb_115656_010 0.1962684098 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
6 Hb_004212_040 0.2088144372 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_002025_090 0.234272008 - - unnamed protein product [Coffea canephora]
8 Hb_000172_130 0.2589725134 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
9 Hb_001282_030 0.2593988701 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_001446_010 0.26091418 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_000711_020 0.2616521381 - - major allergen Pru ar 1-like [Jatropha curcas]
12 Hb_002791_020 0.2649154701 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
13 Hb_001206_010 0.2705674124 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
14 Hb_001062_020 0.2775183236 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
15 Hb_086607_010 0.2805310499 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_049275_010 0.2809819344 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
17 Hb_001523_030 0.2864875637 - - protein binding protein, putative [Ricinus communis]
18 Hb_170156_010 0.2865444742 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_012305_090 0.2866194022 - - hypothetical protein VITISV_018166 [Vitis vinifera]
20 Hb_167183_010 0.2868162714 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_057451_040 Hb_057451_040 Hb_000268_100 Hb_000268_100 Hb_057451_040--Hb_000268_100 Hb_011478_010 Hb_011478_010 Hb_057451_040--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_057451_040--Hb_003711_030 Hb_115656_010 Hb_115656_010 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_057451_040--Hb_002025_090 Hb_000268_100--Hb_011478_010 Hb_027357_010 Hb_027357_010 Hb_000268_100--Hb_027357_010 Hb_000268_100--Hb_003711_030 Hb_171685_040 Hb_171685_040 Hb_000268_100--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_000268_100--Hb_171685_030 Hb_011478_010--Hb_003711_030 Hb_167183_010 Hb_167183_010 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_011478_010--Hb_002122_020 Hb_003711_030--Hb_167183_010 Hb_003711_030--Hb_002025_090 Hb_003711_030--Hb_002122_020 Hb_001282_030 Hb_001282_030 Hb_115656_010--Hb_001282_030 Hb_115656_010--Hb_004212_040 Hb_115656_010--Hb_002025_090 Hb_012092_080 Hb_012092_080 Hb_115656_010--Hb_012092_080 Hb_142570_010 Hb_142570_010 Hb_115656_010--Hb_142570_010 Hb_032531_010 Hb_032531_010 Hb_004212_040--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_004212_040--Hb_050334_010 Hb_000940_190 Hb_000940_190 Hb_004212_040--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_004212_040--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_004212_040--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_004212_040--Hb_006157_050 Hb_002025_090--Hb_000268_100 Hb_030370_010 Hb_030370_010 Hb_002025_090--Hb_030370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00421278 0 0 0 0.00894482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0175314 0.0072391 0.0391192

CAGE analysis