Hb_057688_010

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig57688: 367-1628
Sequence    

Annotation

kegg
ID rcu:RCOM_0500140
description transcription factor, putative
nr
ID XP_012085300.1
description PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
swissprot
ID C0SUT9
description Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1
trembl
ID A0A067K3X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17677 PE=4 SV=1
Gene Ontology
ID GO:0006464
description lysine-specific demethylase jmj16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49689: 35-1671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057688_010 0.0 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
2 Hb_002205_030 0.0565528196 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
3 Hb_000710_040 0.0635901977 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
4 Hb_001089_030 0.0693435528 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
5 Hb_001720_040 0.0733248487 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000803_270 0.0741448978 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
7 Hb_183510_020 0.0766162847 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_001862_130 0.0792001706 - - Protein FRIGIDA, putative [Ricinus communis]
9 Hb_000749_010 0.0795186198 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
10 Hb_000111_170 0.0804498453 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
11 Hb_000189_600 0.0807980805 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
12 Hb_183433_010 0.0818637523 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
13 Hb_001301_150 0.0835090223 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
14 Hb_000409_050 0.0840928698 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
15 Hb_000976_140 0.0852236831 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
16 Hb_028960_020 0.0862377715 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
17 Hb_000416_110 0.0863327552 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
18 Hb_002986_100 0.0864353896 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
19 Hb_000227_220 0.0871217937 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
20 Hb_000085_210 0.0874599026 - - DNA topoisomerase type I, putative [Ricinus communis]

Gene co-expression network

sample Hb_057688_010 Hb_057688_010 Hb_002205_030 Hb_002205_030 Hb_057688_010--Hb_002205_030 Hb_000710_040 Hb_000710_040 Hb_057688_010--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_057688_010--Hb_001089_030 Hb_001720_040 Hb_001720_040 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_183510_020 Hb_183510_020 Hb_057688_010--Hb_183510_020 Hb_028960_020 Hb_028960_020 Hb_002205_030--Hb_028960_020 Hb_000797_040 Hb_000797_040 Hb_002205_030--Hb_000797_040 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_000665_120 Hb_000665_120 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_000710_040--Hb_183510_020 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_007590_020 Hb_007590_020 Hb_001089_030--Hb_007590_020 Hb_001089_030--Hb_000227_220 Hb_001089_030--Hb_001720_040 Hb_004020_040 Hb_004020_040 Hb_001089_030--Hb_004020_040 Hb_004837_180 Hb_004837_180 Hb_001089_030--Hb_004837_180 Hb_002986_100 Hb_002986_100 Hb_001720_040--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001720_040--Hb_005867_070 Hb_001720_040--Hb_004837_180 Hb_001720_040--Hb_000710_040 Hb_001720_040--Hb_007590_020 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_023313_040 Hb_023313_040 Hb_000803_270--Hb_023313_040 Hb_000006_010 Hb_000006_010 Hb_000803_270--Hb_000006_010 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000702_090 Hb_000702_090 Hb_000803_270--Hb_000702_090 Hb_000803_270--Hb_183510_020 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_183510_020--Hb_005867_070 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4064 3.85698 4.3682 3.54198 3.554 3.27334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24514 3.24096 1.26655 4.54686 4.55395

CAGE analysis