Hb_057716_010

Information

Type -
Description -
Location Contig57716: 81-815
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057716_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_062192_050 0.0677676657 - - -
3 Hb_001856_290 0.0906259132 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
4 Hb_052139_010 0.1099256821 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
5 Hb_007533_050 0.1223489115 - - -
6 Hb_031194_020 0.1246076654 - - BnaCnng13030D [Brassica napus]
7 Hb_026188_010 0.1283541314 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
8 Hb_000645_270 0.1325962928 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
9 Hb_007101_090 0.1381959208 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
10 Hb_001999_330 0.1388477246 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
11 Hb_001001_130 0.1416213045 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
12 Hb_000135_080 0.143396634 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_001401_030 0.1458163128 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
14 Hb_003772_010 0.1474612283 - - polyprotein [Oryza australiensis]
15 Hb_000907_050 0.1478646897 - - -
16 Hb_003462_170 0.1481819579 - - unnamed protein product [Vitis vinifera]
17 Hb_000844_060 0.1529769172 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
18 Hb_032016_010 0.1543113138 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
19 Hb_054865_040 0.1560791653 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_000000_090 0.1588403219 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_057716_010 Hb_057716_010 Hb_062192_050 Hb_062192_050 Hb_057716_010--Hb_062192_050 Hb_001856_290 Hb_001856_290 Hb_057716_010--Hb_001856_290 Hb_052139_010 Hb_052139_010 Hb_057716_010--Hb_052139_010 Hb_007533_050 Hb_007533_050 Hb_057716_010--Hb_007533_050 Hb_031194_020 Hb_031194_020 Hb_057716_010--Hb_031194_020 Hb_026188_010 Hb_026188_010 Hb_057716_010--Hb_026188_010 Hb_001401_030 Hb_001401_030 Hb_062192_050--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_062192_050--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_062192_050--Hb_003772_010 Hb_024248_010 Hb_024248_010 Hb_062192_050--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_062192_050--Hb_005676_020 Hb_001856_290--Hb_052139_010 Hb_007101_090 Hb_007101_090 Hb_001856_290--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_001856_290--Hb_001001_130 Hb_054865_040 Hb_054865_040 Hb_001856_290--Hb_054865_040 Hb_001856_290--Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_052139_010--Hb_007101_090 Hb_052139_010--Hb_001001_130 Hb_000645_270 Hb_000645_270 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_032016_010 Hb_032016_010 Hb_007533_050--Hb_032016_010 Hb_000432_020 Hb_000432_020 Hb_007533_050--Hb_000432_020 Hb_003311_020 Hb_003311_020 Hb_007533_050--Hb_003311_020 Hb_000567_270 Hb_000567_270 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_006455_020 Hb_006455_020 Hb_007533_050--Hb_006455_020 Hb_031194_020--Hb_000645_270 Hb_003622_050 Hb_003622_050 Hb_031194_020--Hb_003622_050 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060 Hb_009095_020 Hb_009095_020 Hb_026188_010--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_026188_010--Hb_000336_130 Hb_026188_010--Hb_000645_270 Hb_063885_010 Hb_063885_010 Hb_026188_010--Hb_063885_010 Hb_034168_060 Hb_034168_060 Hb_026188_010--Hb_034168_060 Hb_001999_330 Hb_001999_330 Hb_026188_010--Hb_001999_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.107012 0.169169 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.206891 2.25208

CAGE analysis