Hb_057746_010

Information

Type -
Description -
Location Contig57746: 1540-1755
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057746_010 0.0 - - -
2 Hb_004317_050 0.1677043078 - - -
3 Hb_165078_010 0.2093928835 - - -
4 Hb_002490_040 0.2095840924 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
5 Hb_000563_290 0.2184715215 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
6 Hb_000195_050 0.218807986 - - -
7 Hb_038675_010 0.2252907177 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
8 Hb_138652_020 0.2255306896 - - -
9 Hb_059069_010 0.2255685839 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
10 Hb_000831_040 0.2259470009 - - -
11 Hb_011360_100 0.2302812835 - - -
12 Hb_004429_040 0.2318768955 - - -
13 Hb_001023_020 0.2325215878 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
14 Hb_074701_010 0.232717848 - - -
15 Hb_105484_010 0.2329244467 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
16 Hb_037605_010 0.2336669967 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_004458_050 0.2350146773 - - -
18 Hb_005741_010 0.2367748469 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
19 Hb_012194_010 0.2418071057 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_001241_060 0.2510690863 - - -

Gene co-expression network

sample Hb_057746_010 Hb_057746_010 Hb_004317_050 Hb_004317_050 Hb_057746_010--Hb_004317_050 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_002490_040 Hb_002490_040 Hb_057746_010--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_057746_010--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_004317_050--Hb_002490_040 Hb_004429_040 Hb_004429_040 Hb_004317_050--Hb_004429_040 Hb_004317_050--Hb_000563_290 Hb_004317_050--Hb_000195_050 Hb_001241_060 Hb_001241_060 Hb_004317_050--Hb_001241_060 Hb_105484_010 Hb_105484_010 Hb_165078_010--Hb_105484_010 Hb_050286_020 Hb_050286_020 Hb_165078_010--Hb_050286_020 Hb_000831_040 Hb_000831_040 Hb_165078_010--Hb_000831_040 Hb_098842_010 Hb_098842_010 Hb_165078_010--Hb_098842_010 Hb_165078_010--Hb_004317_050 Hb_002490_040--Hb_004429_040 Hb_002490_040--Hb_000563_290 Hb_002490_040--Hb_001241_060 Hb_002490_040--Hb_000195_050 Hb_002490_040--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_040--Hb_059069_010 Hb_000563_290--Hb_000195_050 Hb_000563_290--Hb_004429_040 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_038675_010--Hb_059069_010 Hb_038675_010--Hb_011360_100 Hb_038675_010--Hb_004458_050 Hb_038675_010--Hb_005741_010 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.486 10.989 8.71853 0 12.3109 361.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77979 4.34958 0 11.2315 0

CAGE analysis