Hb_057796_010

Information

Type -
Description -
Location Contig57796: 18-596
Sequence    

Annotation

kegg
ID tcc:TCM_039897
description CCHC-type integrase
nr
ID XP_012487865.1
description PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q7XYU3
description Integrase (Fragment) OS=Gossypium hirsutum PE=4 SV=1
Gene Ontology
ID GO:0003676
description cchc-type integrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057796_010 0.0 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
2 Hb_000920_290 0.1620771603 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_003053_050 0.1661052012 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
4 Hb_001404_080 0.1758646038 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011828_010 0.1785831094 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
6 Hb_000473_120 0.1803673286 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
7 Hb_000922_060 0.1867999922 - - kinesin light chain, putative [Ricinus communis]
8 Hb_000815_230 0.1873576386 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_530 0.1917163113 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
10 Hb_012799_050 0.1919269399 - - PREDICTED: remorin [Jatropha curcas]
11 Hb_000566_180 0.1956146545 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
12 Hb_000492_080 0.1966938015 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
13 Hb_007735_060 0.1978334075 - - PPase [Hevea brasiliensis]
14 Hb_027445_030 0.1984431419 - - F-box/LRR-repeat protein, putative [Ricinus communis]
15 Hb_007897_030 0.1989526169 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
16 Hb_004097_090 0.1997105376 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
17 Hb_004994_350 0.2002399044 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
18 Hb_000031_230 0.2004787112 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_000369_080 0.2009866786 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
20 Hb_001998_220 0.2019705851 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_057796_010 Hb_057796_010 Hb_000920_290 Hb_000920_290 Hb_057796_010--Hb_000920_290 Hb_003053_050 Hb_003053_050 Hb_057796_010--Hb_003053_050 Hb_001404_080 Hb_001404_080 Hb_057796_010--Hb_001404_080 Hb_011828_010 Hb_011828_010 Hb_057796_010--Hb_011828_010 Hb_000473_120 Hb_000473_120 Hb_057796_010--Hb_000473_120 Hb_000922_060 Hb_000922_060 Hb_057796_010--Hb_000922_060 Hb_000920_290--Hb_000473_120 Hb_004116_180 Hb_004116_180 Hb_000920_290--Hb_004116_180 Hb_002909_100 Hb_002909_100 Hb_000920_290--Hb_002909_100 Hb_000470_110 Hb_000470_110 Hb_000920_290--Hb_000470_110 Hb_143766_030 Hb_143766_030 Hb_000920_290--Hb_143766_030 Hb_000200_170 Hb_000200_170 Hb_000920_290--Hb_000200_170 Hb_000031_230 Hb_000031_230 Hb_003053_050--Hb_000031_230 Hb_010344_030 Hb_010344_030 Hb_003053_050--Hb_010344_030 Hb_000815_230 Hb_000815_230 Hb_003053_050--Hb_000815_230 Hb_000997_100 Hb_000997_100 Hb_003053_050--Hb_000997_100 Hb_002053_050 Hb_002053_050 Hb_003053_050--Hb_002053_050 Hb_000336_200 Hb_000336_200 Hb_003053_050--Hb_000336_200 Hb_001140_170 Hb_001140_170 Hb_001404_080--Hb_001140_170 Hb_001195_090 Hb_001195_090 Hb_001404_080--Hb_001195_090 Hb_001404_080--Hb_011828_010 Hb_005489_150 Hb_005489_150 Hb_001404_080--Hb_005489_150 Hb_001404_080--Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_031089_050 Hb_031089_050 Hb_000473_120--Hb_031089_050 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_020805_120 Hb_020805_120 Hb_000473_120--Hb_020805_120 Hb_003006_080 Hb_003006_080 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_003682_070 Hb_003682_070 Hb_000922_060--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000922_060--Hb_000000_310 Hb_005192_010 Hb_005192_010 Hb_000922_060--Hb_005192_010 Hb_183086_030 Hb_183086_030 Hb_000922_060--Hb_183086_030 Hb_000300_510 Hb_000300_510 Hb_000922_060--Hb_000300_510 Hb_022250_010 Hb_022250_010 Hb_000922_060--Hb_022250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0458127 0.389275 0.286271 0.571398 0.0891647 0.353239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0 0.145614 0.137621 0.644187

CAGE analysis