Hb_057862_010

Information

Type -
Description -
Location Contig57862: 86-764
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49754: 63-686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057862_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_185608_010 0.0375675786 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
3 Hb_162450_010 0.0515972673 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_049955_010 0.0623475118 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
5 Hb_002740_140 0.0724363868 - - hypothetical protein L484_022679 [Morus notabilis]
6 Hb_011344_040 0.0731154367 - - PREDICTED: 21 kDa protein [Jatropha curcas]
7 Hb_093084_030 0.0738924104 - - oleosin2 [Plukenetia volubilis]
8 Hb_002311_030 0.0795143651 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004218_270 0.0809917084 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
10 Hb_010193_020 0.0825286536 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_007113_060 0.0862569436 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
12 Hb_181908_010 0.0867290156 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
13 Hb_011082_030 0.0889471682 - - hypothetical protein RCOM_0852210 [Ricinus communis]
14 Hb_003858_010 0.0899364213 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
15 Hb_166360_010 0.0918255118 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
16 Hb_005269_060 0.0918503322 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
17 Hb_001454_420 0.0927896109 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_007382_110 0.0957785078 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
19 Hb_000531_030 0.0961799654 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008008_040 0.096918839 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_057862_010 Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_057862_010--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_057862_010--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_057862_010--Hb_049955_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_011344_040 Hb_011344_040 Hb_057862_010--Hb_011344_040 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_185608_010--Hb_162450_010 Hb_185608_010--Hb_049955_010 Hb_185608_010--Hb_011344_040 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_003858_010 Hb_003858_010 Hb_185608_010--Hb_003858_010 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_162450_010--Hb_093084_030 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_049955_010--Hb_005532_080 Hb_002311_030 Hb_002311_030 Hb_002740_140--Hb_002311_030 Hb_002740_140--Hb_162450_010 Hb_002740_140--Hb_049955_010 Hb_000815_050 Hb_000815_050 Hb_002740_140--Hb_000815_050 Hb_050898_040 Hb_050898_040 Hb_002740_140--Hb_050898_040 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_000227_360 Hb_000227_360 Hb_011344_040--Hb_000227_360 Hb_011344_040--Hb_003858_010 Hb_001357_290 Hb_001357_290 Hb_011344_040--Hb_001357_290 Hb_093084_030--Hb_004218_270 Hb_093084_030--Hb_166360_010 Hb_181908_010 Hb_181908_010 Hb_093084_030--Hb_181908_010 Hb_093084_030--Hb_185608_010 Hb_093084_030--Hb_005532_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.10025 8.61496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136301 3.61938

CAGE analysis