Hb_057878_010

Information

Type -
Description -
Location Contig57878: 451-1082
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23520g
description hypothetical protein
nr
ID CAN60313.1
description hypothetical protein VITISV_036304 [Vitis vinifera]
swissprot
ID Q2M2I8
description AP2-associated protein kinase 1 OS=Homo sapiens GN=AAK1 PE=1 SV=3
trembl
ID A5AJP3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036304 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase ddb_g0276461

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057878_010 0.0 - - hypothetical protein VITISV_036304 [Vitis vinifera]
2 Hb_002400_470 0.0650400699 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_002078_020 0.0768541177 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
4 Hb_011310_210 0.0792681682 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
5 Hb_000442_150 0.0800569892 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
6 Hb_000236_380 0.0827419728 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
7 Hb_002671_140 0.0829174171 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_001083_050 0.0836239574 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
9 Hb_005993_050 0.0841788945 - - Protein AFR, putative [Ricinus communis]
10 Hb_003813_040 0.0850040238 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
11 Hb_008864_110 0.0851130235 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_001946_040 0.0854913722 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_320 0.0857449557 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
14 Hb_001135_130 0.0860977695 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
15 Hb_006831_110 0.0862041311 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
16 Hb_004055_150 0.0864854196 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000777_050 0.0864937534 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
18 Hb_008803_090 0.0881185224 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
19 Hb_000309_040 0.088243017 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
20 Hb_001926_030 0.0888496478 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_057878_010 Hb_057878_010 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000442_150 Hb_000442_150 Hb_057878_010--Hb_000442_150 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_002671_140 Hb_002671_140 Hb_057878_010--Hb_002671_140 Hb_008864_110 Hb_008864_110 Hb_002400_470--Hb_008864_110 Hb_001047_030 Hb_001047_030 Hb_002400_470--Hb_001047_030 Hb_002400_470--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_002078_020--Hb_001926_030 Hb_004055_150 Hb_004055_150 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_000777_050 Hb_000777_050 Hb_011310_210--Hb_000777_050 Hb_003549_090 Hb_003549_090 Hb_011310_210--Hb_003549_090 Hb_002942_050 Hb_002942_050 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_008246_040 Hb_008246_040 Hb_000442_150--Hb_008246_040 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_000562_090 Hb_000562_090 Hb_002671_140--Hb_000562_090 Hb_003609_030 Hb_003609_030 Hb_002671_140--Hb_003609_030 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_002671_140--Hb_008246_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9371 20.0443 17.0863 17.9719 24.303 24.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2725 11.4905 20.8572 9.2466 8.43536

CAGE analysis