Hb_057880_020

Information

Type -
Description -
Location Contig57880: 3700-4309
Sequence    

Annotation

kegg
ID rcu:RCOM_1049530
description serine-threonine protein kinase, plant-type, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_012092869.1
description PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
swissprot
ID C0LGF4
description LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1
trembl
ID A0A067KCF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07368 PE=3 SV=1
Gene Ontology
ID GO:0016020
description receptor-like protein kinase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057880_020 0.0 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
2 Hb_000462_160 0.0661598164 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_020367_040 0.0764399029 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
4 Hb_002620_040 0.0773322017 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
5 Hb_000139_030 0.0838801679 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
6 Hb_048755_030 0.0991982836 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_066293_010 0.1014270361 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_002226_090 0.1036302256 - - Stachyose synthase precursor, putative [Ricinus communis]
9 Hb_001459_020 0.106691444 - - ankyrin repeat protein [Bruguiera gymnorhiza]
10 Hb_000951_070 0.1137938879 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
11 Hb_010402_040 0.1150332321 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
12 Hb_000389_170 0.1160464118 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_004291_030 0.1182185406 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
14 Hb_011537_130 0.1187344793 - - unnamed protein product [Vitis vinifera]
15 Hb_001295_080 0.1188605919 - - Protein KES1, putative [Ricinus communis]
16 Hb_000441_080 0.1210215528 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_005675_030 0.121096343 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
18 Hb_169948_010 0.122669778 - - hypothetical protein VITISV_006524 [Vitis vinifera]
19 Hb_002111_010 0.1277971712 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
20 Hb_000081_110 0.1284189421 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_057880_020 Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_057880_020--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_057880_020--Hb_020367_040 Hb_002620_040 Hb_002620_040 Hb_057880_020--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_057880_020--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_000462_160--Hb_002620_040 Hb_000462_160--Hb_020367_040 Hb_000462_160--Hb_000139_030 Hb_000462_160--Hb_048755_030 Hb_002226_090 Hb_002226_090 Hb_000462_160--Hb_002226_090 Hb_020367_040--Hb_002226_090 Hb_002701_250 Hb_002701_250 Hb_020367_040--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_020367_040--Hb_007904_110 Hb_000081_110 Hb_000081_110 Hb_020367_040--Hb_000081_110 Hb_000389_170 Hb_000389_170 Hb_020367_040--Hb_000389_170 Hb_002620_040--Hb_000139_030 Hb_001295_080 Hb_001295_080 Hb_002620_040--Hb_001295_080 Hb_001459_020 Hb_001459_020 Hb_002620_040--Hb_001459_020 Hb_002188_150 Hb_002188_150 Hb_002620_040--Hb_002188_150 Hb_001579_050 Hb_001579_050 Hb_000139_030--Hb_001579_050 Hb_000139_030--Hb_000081_110 Hb_000139_030--Hb_020367_040 Hb_000139_030--Hb_048755_030 Hb_000482_180 Hb_000482_180 Hb_048755_030--Hb_000482_180 Hb_011537_130 Hb_011537_130 Hb_048755_030--Hb_011537_130 Hb_048755_030--Hb_001579_050 Hb_002111_010 Hb_002111_010 Hb_048755_030--Hb_002111_010 Hb_048755_030--Hb_020367_040 Hb_125961_010 Hb_125961_010 Hb_066293_010--Hb_125961_010 Hb_003226_230 Hb_003226_230 Hb_066293_010--Hb_003226_230 Hb_169948_010 Hb_169948_010 Hb_066293_010--Hb_169948_010 Hb_000120_480 Hb_000120_480 Hb_066293_010--Hb_000120_480 Hb_162676_010 Hb_162676_010 Hb_066293_010--Hb_162676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.37156 0.410922 0.641025 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106703 2.98172

CAGE analysis