Hb_058116_010

Information

Type -
Description -
Location Contig58116: 891-2075
Sequence    

Annotation

kegg
ID rcu:RCOM_0472110
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_002527337.1
description Cycloartenol synthase, putative [Ricinus communis]
swissprot
ID Q2XPU7
description Lupeol synthase OS=Ricinus communis PE=1 SV=1
trembl
ID B9SMW8
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_0472110 PE=3 SV=1
Gene Ontology
ID GO:0016871
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058116_010 0.0 - - Cycloartenol synthase, putative [Ricinus communis]
2 Hb_006711_010 0.1295468011 - - cytoplasmic dynein light chain, putative [Ricinus communis]
3 Hb_011819_030 0.1503637525 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000365_300 0.1585331141 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
5 Hb_003074_070 0.1605578475 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_002743_030 0.1636096402 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
7 Hb_002422_040 0.1670275024 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
8 Hb_003677_010 0.1670848514 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
9 Hb_002603_020 0.1739638387 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
10 Hb_004109_300 0.174929985 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
11 Hb_125876_010 0.1753909484 - - unnamed protein product [Vitis vinifera]
12 Hb_005731_080 0.1758383353 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_005653_020 0.1766022459 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
14 Hb_050484_010 0.1770550319 - - unnamed protein product [Vitis vinifera]
15 Hb_047163_010 0.1795536864 - - PREDICTED: periaxin-like [Populus euphratica]
16 Hb_002234_150 0.1799475252 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
17 Hb_059162_010 0.1802618007 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001080_310 0.1805165085 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_005539_160 0.1809693623 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_156949_010 0.1814194771 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_058116_010 Hb_058116_010 Hb_006711_010 Hb_006711_010 Hb_058116_010--Hb_006711_010 Hb_011819_030 Hb_011819_030 Hb_058116_010--Hb_011819_030 Hb_000365_300 Hb_000365_300 Hb_058116_010--Hb_000365_300 Hb_003074_070 Hb_003074_070 Hb_058116_010--Hb_003074_070 Hb_002743_030 Hb_002743_030 Hb_058116_010--Hb_002743_030 Hb_002422_040 Hb_002422_040 Hb_058116_010--Hb_002422_040 Hb_000380_040 Hb_000380_040 Hb_006711_010--Hb_000380_040 Hb_003677_010 Hb_003677_010 Hb_006711_010--Hb_003677_010 Hb_001269_020 Hb_001269_020 Hb_006711_010--Hb_001269_020 Hb_001454_340 Hb_001454_340 Hb_006711_010--Hb_001454_340 Hb_004109_300 Hb_004109_300 Hb_006711_010--Hb_004109_300 Hb_005993_070 Hb_005993_070 Hb_011819_030--Hb_005993_070 Hb_011819_030--Hb_002743_030 Hb_002603_020 Hb_002603_020 Hb_011819_030--Hb_002603_020 Hb_011819_030--Hb_004109_300 Hb_005731_080 Hb_005731_080 Hb_011819_030--Hb_005731_080 Hb_011819_030--Hb_003074_070 Hb_002311_050 Hb_002311_050 Hb_000365_300--Hb_002311_050 Hb_000365_300--Hb_005731_080 Hb_001141_170 Hb_001141_170 Hb_000365_300--Hb_001141_170 Hb_001080_310 Hb_001080_310 Hb_000365_300--Hb_001080_310 Hb_012019_030 Hb_012019_030 Hb_000365_300--Hb_012019_030 Hb_000365_300--Hb_002422_040 Hb_003074_070--Hb_002743_030 Hb_122574_020 Hb_122574_020 Hb_003074_070--Hb_122574_020 Hb_004195_040 Hb_004195_040 Hb_003074_070--Hb_004195_040 Hb_003074_070--Hb_012019_030 Hb_003074_070--Hb_004109_300 Hb_000951_030 Hb_000951_030 Hb_003074_070--Hb_000951_030 Hb_125876_010 Hb_125876_010 Hb_002743_030--Hb_125876_010 Hb_002743_030--Hb_002603_020 Hb_047163_010 Hb_047163_010 Hb_002743_030--Hb_047163_010 Hb_002743_030--Hb_005731_080 Hb_002743_030--Hb_004109_300 Hb_004185_040 Hb_004185_040 Hb_002422_040--Hb_004185_040 Hb_002234_150 Hb_002234_150 Hb_002422_040--Hb_002234_150 Hb_002422_040--Hb_002311_050 Hb_002422_040--Hb_004195_040 Hb_059162_010 Hb_059162_010 Hb_002422_040--Hb_059162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.919797 0 0.0816807 0.031739 0.0394598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.102975 2.36794 0

CAGE analysis