Hb_058143_010

Information

Type -
Description -
Location Contig58143: 4733-6863
Sequence    

Annotation

kegg
ID rcu:RCOM_0238060
description Potassium transporter, putative
nr
ID KDP39994.1
description hypothetical protein JCGZ_01992 [Jatropha curcas]
swissprot
ID Q6H4M2
description Potassium transporter 19 OS=Oryza sativa subsp. japonica GN=HAK19 PE=2 SV=1
trembl
ID A0A067L7B4
description Potassium transporter OS=Jatropha curcas GN=JCGZ_01992 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49876: 5110-5548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058143_010 0.0 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
2 Hb_004942_020 0.0870516755 - - Potassium transporter, putative [Ricinus communis]
3 Hb_000352_180 0.1248717957 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010589_050 0.1305827095 - - -
5 Hb_012586_020 0.13529799 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
6 Hb_002478_020 0.1374462701 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
7 Hb_000316_100 0.1557463181 - - protein with unknown function [Ricinus communis]
8 Hb_039946_010 0.1564342085 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
9 Hb_027892_040 0.1640717015 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
10 Hb_148850_010 0.1643533136 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
11 Hb_004968_070 0.1667163987 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000340_440 0.1732224011 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
13 Hb_113906_010 0.1761133363 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
14 Hb_001396_090 0.1821648802 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
15 Hb_001143_070 0.1842551353 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000033_040 0.1878406483 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000352_160 0.1955194889 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002290_050 0.1956409805 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002784_150 0.1968466867 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
20 Hb_005520_010 0.1972030666 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_058143_010 Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_004942_020--Hb_012586_020 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_000352_180--Hb_010589_050 Hb_000352_180--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_000352_180--Hb_039946_010 Hb_000352_180--Hb_113906_010 Hb_010589_050--Hb_012586_020 Hb_010589_050--Hb_039946_010 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_012586_020--Hb_039946_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_002478_020--Hb_039946_010 Hb_002478_020--Hb_001143_070 Hb_000920_320 Hb_000920_320 Hb_002478_020--Hb_000920_320 Hb_002478_020--Hb_012586_020 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.28912 1.90187 0.37242 0.662007 5.03991 0.879274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.142 77.2001 25.4782 2.26138 0.182534

CAGE analysis