Hb_058148_010

Information

Type -
Description -
Location Contig58148: 8-1182
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104216022, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058148_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_007194_020 0.0439694006 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
3 Hb_063472_010 0.0836644311 - - hypothetical protein [Pseudomonas tolaasii]
4 Hb_045527_010 0.1295386166 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
5 Hb_000862_020 0.139499243 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
6 Hb_006216_010 0.1592638916 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
7 Hb_010810_090 0.1595833042 - - -
8 Hb_150998_010 0.1708727678 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_003185_060 0.1967668062 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
10 Hb_004361_030 0.2619491625 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
11 Hb_046117_040 0.268667706 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
12 Hb_000407_060 0.2999216357 - - -
13 Hb_027337_070 0.3004053765 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
14 Hb_000281_170 0.3078824769 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_172632_020 0.3083362834 - - -
16 Hb_126907_010 0.3099362841 - - -
17 Hb_020581_030 0.3111146902 - - -
18 Hb_002774_130 0.313696694 - - -
19 Hb_001687_050 0.3167312337 - - -
20 Hb_000117_170 0.3276967749 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_058148_010 Hb_058148_010 Hb_007194_020 Hb_007194_020 Hb_058148_010--Hb_007194_020 Hb_063472_010 Hb_063472_010 Hb_058148_010--Hb_063472_010 Hb_045527_010 Hb_045527_010 Hb_058148_010--Hb_045527_010 Hb_000862_020 Hb_000862_020 Hb_058148_010--Hb_000862_020 Hb_006216_010 Hb_006216_010 Hb_058148_010--Hb_006216_010 Hb_010810_090 Hb_010810_090 Hb_058148_010--Hb_010810_090 Hb_007194_020--Hb_000862_020 Hb_007194_020--Hb_063472_010 Hb_007194_020--Hb_006216_010 Hb_150998_010 Hb_150998_010 Hb_007194_020--Hb_150998_010 Hb_007194_020--Hb_010810_090 Hb_063472_010--Hb_045527_010 Hb_003185_060 Hb_003185_060 Hb_063472_010--Hb_003185_060 Hb_063472_010--Hb_006216_010 Hb_063472_010--Hb_010810_090 Hb_045527_010--Hb_003185_060 Hb_045527_010--Hb_007194_020 Hb_000580_040 Hb_000580_040 Hb_045527_010--Hb_000580_040 Hb_045527_010--Hb_010810_090 Hb_000862_020--Hb_150998_010 Hb_000862_020--Hb_006216_010 Hb_046117_040 Hb_046117_040 Hb_000862_020--Hb_046117_040 Hb_000862_020--Hb_010810_090 Hb_006216_010--Hb_150998_010 Hb_006216_010--Hb_046117_040 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010 Hb_001410_100 Hb_001410_100 Hb_010810_090--Hb_001410_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0168804 0 0 0 0.0219162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0146525 0

CAGE analysis