Hb_058471_020

Information

Type -
Description -
Location Contig58471: 15170-17701
Sequence    

Annotation

kegg
ID rcu:RCOM_1175460
description Beta-expansin 3 precursor, putative
nr
ID XP_012088304.1
description PREDICTED: expansin-B3-like [Jatropha curcas]
swissprot
ID Q9M0I2
description Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2
trembl
ID A0A067JMV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25805 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-b3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49962: 15230-17859
cDNA
(Sanger)
(ID:Location)		 013_E12.ab1: 16540-17859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058471_020 0.0 - - PREDICTED: expansin-B3-like [Jatropha curcas]
2 Hb_005116_150 0.1134955619 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
3 Hb_000789_160 0.1146749002 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
4 Hb_000331_630 0.1221257861 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
5 Hb_007760_020 0.1262423069 - - PREDICTED: expansin-A1 [Populus euphratica]
6 Hb_003427_030 0.1268256069 - - -
7 Hb_000997_080 0.1281758125 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
8 Hb_001213_060 0.128523593 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
9 Hb_000003_610 0.1292813277 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
10 Hb_087992_010 0.1315997892 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_050898_040 0.1317498367 - - -
12 Hb_000207_060 0.1364852669 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
13 Hb_002740_140 0.1372424866 - - hypothetical protein L484_022679 [Morus notabilis]
14 Hb_000984_130 0.1372605839 - - tubulin [Ornithogalum longebracteatum]
15 Hb_003544_080 0.13797675 - - Protein HVA22, putative [Ricinus communis]
16 Hb_002902_060 0.1412146678 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
17 Hb_002311_030 0.1419556508 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000614_300 0.1439836274 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
19 Hb_010962_020 0.1442313086 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
20 Hb_002224_020 0.1444506782 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]

Gene co-expression network

sample Hb_058471_020 Hb_058471_020 Hb_005116_150 Hb_005116_150 Hb_058471_020--Hb_005116_150 Hb_000789_160 Hb_000789_160 Hb_058471_020--Hb_000789_160 Hb_000331_630 Hb_000331_630 Hb_058471_020--Hb_000331_630 Hb_007760_020 Hb_007760_020 Hb_058471_020--Hb_007760_020 Hb_003427_030 Hb_003427_030 Hb_058471_020--Hb_003427_030 Hb_000997_080 Hb_000997_080 Hb_058471_020--Hb_000997_080 Hb_005116_150--Hb_007760_020 Hb_009151_010 Hb_009151_010 Hb_005116_150--Hb_009151_010 Hb_000531_030 Hb_000531_030 Hb_005116_150--Hb_000531_030 Hb_007113_060 Hb_007113_060 Hb_005116_150--Hb_007113_060 Hb_002311_030 Hb_002311_030 Hb_005116_150--Hb_002311_030 Hb_010142_060 Hb_010142_060 Hb_005116_150--Hb_010142_060 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_000789_160--Hb_003427_030 Hb_000207_060 Hb_000207_060 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170 Hb_000331_630--Hb_000614_300 Hb_000331_630--Hb_002263_050 Hb_001357_110 Hb_001357_110 Hb_000331_630--Hb_001357_110 Hb_003680_240 Hb_003680_240 Hb_000331_630--Hb_003680_240 Hb_000331_630--Hb_000207_060 Hb_007760_020--Hb_009151_010 Hb_007760_020--Hb_010142_060 Hb_001534_140 Hb_001534_140 Hb_007760_020--Hb_001534_140 Hb_009252_070 Hb_009252_070 Hb_007760_020--Hb_009252_070 Hb_007760_020--Hb_000531_030 Hb_002224_020 Hb_002224_020 Hb_003427_030--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000011_280 Hb_000011_280 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.899995 0.178995 11.5838 37.7567 0.0473036 0.157753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366924 0.0288645 0 2.13594 9.24069

CAGE analysis