Hb_058620_050

Information

Type -
Description -
Location Contig58620: 64543-67194
Sequence    

Annotation

kegg
ID rcu:RCOM_1445840
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012087456.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID Q6PWU2
description (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1
trembl
ID B9RH09
description (R)-limonene synthase, putative OS=Ricinus communis GN=RCOM_1445840 PE=4 SV=1
Gene Ontology
ID GO:0009536
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49984: 65139-65439 , PASA_asmbl_49985: 65626-66384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058620_050 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_058620_040 0.020985638 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
3 Hb_000141_070 0.0428199001 - - l-lactate dehydrogenase, putative [Ricinus communis]
4 Hb_003334_080 0.0455277425 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_004693_010 0.0519332602 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
6 Hb_009568_010 0.0584245398 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
7 Hb_007483_040 0.0600483292 - - PREDICTED: protein SRG1-like [Jatropha curcas]
8 Hb_000086_710 0.0621405257 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
9 Hb_006925_010 0.0627414053 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
10 Hb_019392_010 0.0640066698 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
11 Hb_000958_180 0.0651039839 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
12 Hb_185391_010 0.0693506522 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_000329_160 0.0704597021 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
14 Hb_001040_190 0.0717581152 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
15 Hb_148986_010 0.0738125008 - - unnamed protein product [Vitis vinifera]
16 Hb_002553_170 0.0753289616 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
17 Hb_005120_010 0.07585676 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000712_070 0.0761255425 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004057_050 0.0763390183 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_001930_060 0.079666612 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_058620_050 Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_058620_050--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_058620_050--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_058620_050--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040 Hb_058620_040--Hb_003334_080 Hb_058620_040--Hb_000141_070 Hb_058620_040--Hb_004693_010 Hb_006925_010 Hb_006925_010 Hb_058620_040--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_058620_040--Hb_000086_710 Hb_000141_070--Hb_003334_080 Hb_000141_070--Hb_009568_010 Hb_000141_070--Hb_007483_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_000712_070 Hb_000712_070 Hb_004693_010--Hb_000712_070 Hb_004693_010--Hb_000141_070 Hb_004693_010--Hb_003334_080 Hb_000318_440 Hb_000318_440 Hb_004693_010--Hb_000318_440 Hb_009568_010--Hb_007483_040 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_003334_080 Hb_007483_040--Hb_000712_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0567075 0.248557 0.27377 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.8112 0.0381247

CAGE analysis