Hb_058620_070

Information

Type -
Description -
Location Contig58620: 70928-75330
Sequence    

Annotation

kegg
ID ccp:CHC_T00004105001
description hypothetical protein
nr
ID XP_005715401.1
description unnamed protein product [Chondrus crispus]
swissprot
ID A1APN7
description Phosphoglycerate kinase OS=Pelobacter propionicus (strain DSM 2379) GN=pgk PE=3 SV=1
trembl
ID R7QAP7
description Phosphoglycerate kinase OS=Chondrus crispus GN=CHC_T00004105001 PE=3 SV=1
Gene Ontology
ID GO:0016740
description phosphoglycerate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49986: 70905-75273 , PASA_asmbl_49987: 70905-75272 , PASA_asmbl_49988: 71940-75273 , PASA_asmbl_49989: 72979-73293
cDNA
(Sanger)
(ID:Location)		 006_N03.ab1: 72297-75268 , 020_C03.ab1: 72336-75284 , 020_P24.ab1: 72322-75269 , 025_E11.ab1: 72272-75268

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058620_070 0.0 - - unnamed protein product [Chondrus crispus]
2 Hb_009787_030 0.1136257766 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
3 Hb_000270_490 0.1142536658 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
4 Hb_014834_050 0.1150401337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001427_160 0.1168700499 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_003097_070 0.1243109879 - - glucose regulated repressor protein, putative [Ricinus communis]
7 Hb_003994_230 0.1249066129 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
8 Hb_010810_010 0.1254933372 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
9 Hb_006856_010 0.1257432157 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]
10 Hb_005797_010 0.1317118067 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
11 Hb_003671_010 0.132102677 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
12 Hb_000115_150 0.1334377258 - - PREDICTED: IST1 homolog [Jatropha curcas]
13 Hb_023732_030 0.1341381226 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
14 Hb_030736_020 0.1346321158 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003041_050 0.1348652902 - - -
16 Hb_002053_140 0.1354307672 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
17 Hb_000352_300 0.1362954148 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
18 Hb_011214_090 0.1363108483 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_007481_010 0.1372657381 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
20 Hb_000329_060 0.1373904847 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_058620_070 Hb_058620_070 Hb_009787_030 Hb_009787_030 Hb_058620_070--Hb_009787_030 Hb_000270_490 Hb_000270_490 Hb_058620_070--Hb_000270_490 Hb_014834_050 Hb_014834_050 Hb_058620_070--Hb_014834_050 Hb_001427_160 Hb_001427_160 Hb_058620_070--Hb_001427_160 Hb_003097_070 Hb_003097_070 Hb_058620_070--Hb_003097_070 Hb_003994_230 Hb_003994_230 Hb_058620_070--Hb_003994_230 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_000141_080 Hb_000141_080 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_002053_140 Hb_002053_140 Hb_009787_030--Hb_002053_140 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_003693_070 Hb_003693_070 Hb_000270_490--Hb_003693_070 Hb_026198_070 Hb_026198_070 Hb_000270_490--Hb_026198_070 Hb_004127_030 Hb_004127_030 Hb_000270_490--Hb_004127_030 Hb_001575_090 Hb_001575_090 Hb_014834_050--Hb_001575_090 Hb_014834_050--Hb_003994_230 Hb_014834_050--Hb_000120_060 Hb_000159_090 Hb_000159_090 Hb_014834_050--Hb_000159_090 Hb_007460_020 Hb_007460_020 Hb_014834_050--Hb_007460_020 Hb_023732_030 Hb_023732_030 Hb_014834_050--Hb_023732_030 Hb_001427_160--Hb_002053_140 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_000161_040 Hb_000161_040 Hb_003097_070--Hb_000161_040 Hb_002728_080 Hb_002728_080 Hb_003097_070--Hb_002728_080 Hb_012651_010 Hb_012651_010 Hb_003097_070--Hb_012651_010 Hb_000140_350 Hb_000140_350 Hb_003097_070--Hb_000140_350 Hb_010534_010 Hb_010534_010 Hb_003097_070--Hb_010534_010 Hb_033286_010 Hb_033286_010 Hb_003097_070--Hb_033286_010 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.2369 41.2215 75.111 169.262 146.118 61.6481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.042 66.8543 78.8104 123.588 61.543

CAGE analysis