Hb_058620_080

Information

Type -
Description -
Location Contig58620: 78296-79623
Sequence    

Annotation

kegg
ID csv:101226860
description phosphoglycerate kinase, chloroplastic-like
nr
ID XP_012087352.1
description PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
swissprot
ID Q42961
description Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067JME5
description Phosphoglycerate kinase OS=Jatropha curcas GN=JCGZ_22602 PE=3 SV=1
Gene Ontology
ID GO:0009507
description phosphoglycerate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49991: 78047-79351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058620_080 0.0 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
2 Hb_000544_080 0.0880792578 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
3 Hb_009393_130 0.0940422548 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
4 Hb_010557_010 0.0944714757 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
5 Hb_000803_170 0.0955571631 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
6 Hb_011519_050 0.0969076038 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
7 Hb_007803_040 0.0987722688 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
8 Hb_000045_050 0.102868644 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
9 Hb_000089_140 0.1049036448 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
10 Hb_000317_180 0.1053135379 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
11 Hb_002411_100 0.105543262 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_002811_250 0.1107412857 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
13 Hb_002495_090 0.1138707563 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
14 Hb_003948_020 0.1142251547 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
15 Hb_010721_020 0.1159047552 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
16 Hb_002485_050 0.1167380885 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
17 Hb_000061_250 0.1171499484 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
18 Hb_000703_070 0.1193016344 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
19 Hb_000352_280 0.1213647537 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
20 Hb_003605_060 0.1250996616 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_058620_080 Hb_058620_080 Hb_000544_080 Hb_000544_080 Hb_058620_080--Hb_000544_080 Hb_009393_130 Hb_009393_130 Hb_058620_080--Hb_009393_130 Hb_010557_010 Hb_010557_010 Hb_058620_080--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_000544_080--Hb_011519_050 Hb_000045_050 Hb_000045_050 Hb_000544_080--Hb_000045_050 Hb_000061_250 Hb_000061_250 Hb_000544_080--Hb_000061_250 Hb_000544_080--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_000544_080--Hb_005488_190 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_000803_170 Hb_010557_010--Hb_000045_050 Hb_000803_170--Hb_002811_250 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_011519_050--Hb_000061_250 Hb_011519_050--Hb_002411_100 Hb_011519_050--Hb_000045_050 Hb_011519_050--Hb_000703_070 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5095 45.5698 580.872 243.483 44.0705 14.1629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.3697 30.7568 39.3681 29.3917 771.117

CAGE analysis