Hb_059226_020

Information

Type -
Description -
Location Contig59226: 1341-1553
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03910g
description POPTRDRAFT_733004; protease inhibitor/seed storage/lipid transfer family protein
nr
ID KJB52998.1
description hypothetical protein B456_008G287700 [Gossypium raimondii]
swissprot
ID Q43681
description Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1
trembl
ID A0A0D2RPB0
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G287700 PE=4 SV=1
Gene Ontology
ID GO:0008233
description non-specific lipid-transfer protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059226_020 0.0 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
2 Hb_004397_010 0.0927669526 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_039946_040 0.1088192719 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
4 Hb_082733_010 0.1091478281 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
5 Hb_066207_020 0.1229403529 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
6 Hb_030088_010 0.1295287194 - - basic blue copper family protein [Populus trichocarpa]
7 Hb_004330_060 0.1315908799 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
8 Hb_006351_040 0.1401232398 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001091_040 0.1403604266 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
10 Hb_004926_010 0.1431504458 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
11 Hb_081191_010 0.1447103752 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
12 Hb_159012_010 0.1455743958 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
13 Hb_001091_010 0.1512618445 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
14 Hb_014096_010 0.1529637582 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_007007_020 0.1562493124 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000007_070 0.1599385509 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
17 Hb_060236_010 0.1619040223 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
18 Hb_162815_010 0.1632661755 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_002400_480 0.1637776935 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
20 Hb_000480_050 0.1644283531 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_059226_020 Hb_059226_020 Hb_004397_010 Hb_004397_010 Hb_059226_020--Hb_004397_010 Hb_039946_040 Hb_039946_040 Hb_059226_020--Hb_039946_040 Hb_082733_010 Hb_082733_010 Hb_059226_020--Hb_082733_010 Hb_066207_020 Hb_066207_020 Hb_059226_020--Hb_066207_020 Hb_030088_010 Hb_030088_010 Hb_059226_020--Hb_030088_010 Hb_004330_060 Hb_004330_060 Hb_059226_020--Hb_004330_060 Hb_120357_010 Hb_120357_010 Hb_004397_010--Hb_120357_010 Hb_162815_010 Hb_162815_010 Hb_004397_010--Hb_162815_010 Hb_006351_040 Hb_006351_040 Hb_004397_010--Hb_006351_040 Hb_004397_010--Hb_030088_010 Hb_004397_010--Hb_066207_020 Hb_039946_040--Hb_006351_040 Hb_001091_040 Hb_001091_040 Hb_039946_040--Hb_001091_040 Hb_004319_100 Hb_004319_100 Hb_039946_040--Hb_004319_100 Hb_004926_010 Hb_004926_010 Hb_039946_040--Hb_004926_010 Hb_000194_030 Hb_000194_030 Hb_039946_040--Hb_000194_030 Hb_007007_020 Hb_007007_020 Hb_082733_010--Hb_007007_020 Hb_002413_030 Hb_002413_030 Hb_082733_010--Hb_002413_030 Hb_060236_010 Hb_060236_010 Hb_082733_010--Hb_060236_010 Hb_041063_010 Hb_041063_010 Hb_082733_010--Hb_041063_010 Hb_001091_010 Hb_001091_010 Hb_082733_010--Hb_001091_010 Hb_000015_140 Hb_000015_140 Hb_066207_020--Hb_000015_140 Hb_000740_080 Hb_000740_080 Hb_066207_020--Hb_000740_080 Hb_000897_010 Hb_000897_010 Hb_066207_020--Hb_000897_010 Hb_066207_020--Hb_004926_010 Hb_005144_140 Hb_005144_140 Hb_030088_010--Hb_005144_140 Hb_030088_010--Hb_162815_010 Hb_000917_070 Hb_000917_070 Hb_030088_010--Hb_000917_070 Hb_030088_010--Hb_001091_040 Hb_030088_010--Hb_039946_040 Hb_004330_060--Hb_039946_040 Hb_159012_010 Hb_159012_010 Hb_004330_060--Hb_159012_010 Hb_002003_100 Hb_002003_100 Hb_004330_060--Hb_002003_100 Hb_000480_050 Hb_000480_050 Hb_004330_060--Hb_000480_050 Hb_004330_060--Hb_082733_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30604 10.0848 19.5684 226.183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 58.7076 5.28704

CAGE analysis