Hb_059318_010

Information

Type -
Description -
Location Contig59318: 1279-1881
Sequence    

Annotation

kegg
ID rcu:RCOM_0919920
description glutamate receptor 2 plant, putative
nr
ID XP_002515378.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q9C5V5
description Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
trembl
ID B9RNQ9
description Glutamate receptor OS=Ricinus communis GN=RCOM_0919920 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059318_010 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_074966_010 0.0557626424 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_032731_010 0.0602891394 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
4 Hb_001926_020 0.0703499569 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
5 Hb_003777_120 0.0805018696 - - -
6 Hb_008019_010 0.0860139136 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
7 Hb_000049_030 0.0865276532 - - conserved hypothetical protein [Ricinus communis]
8 Hb_111997_010 0.0883841081 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
9 Hb_000243_290 0.0956107633 - - plastidic aldolase family protein [Populus trichocarpa]
10 Hb_004040_010 0.10178452 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
11 Hb_000002_370 0.1037991986 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
12 Hb_018134_010 0.104359581 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
13 Hb_001926_070 0.1074824956 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
14 Hb_011794_050 0.1079221566 - - transcription factor, putative [Ricinus communis]
15 Hb_005890_010 0.1097831757 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
16 Hb_001606_010 0.1138358845 - - kinase, putative [Ricinus communis]
17 Hb_059429_010 0.1148819261 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
18 Hb_018563_010 0.1148873071 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
19 Hb_006188_020 0.1152946417 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
20 Hb_115962_010 0.1187748427 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_059318_010 Hb_059318_010 Hb_074966_010 Hb_074966_010 Hb_059318_010--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_059318_010--Hb_032731_010 Hb_001926_020 Hb_001926_020 Hb_059318_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_074966_010--Hb_001926_020 Hb_111997_010 Hb_111997_010 Hb_074966_010--Hb_111997_010 Hb_074966_010--Hb_003777_120 Hb_074966_010--Hb_032731_010 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050 Hb_032731_010--Hb_001926_020 Hb_001926_070 Hb_001926_070 Hb_032731_010--Hb_001926_070 Hb_032731_010--Hb_003777_120 Hb_001606_010 Hb_001606_010 Hb_032731_010--Hb_001606_010 Hb_001926_020--Hb_003777_120 Hb_001926_020--Hb_005888_050 Hb_006188_020 Hb_006188_020 Hb_001926_020--Hb_006188_020 Hb_000199_040 Hb_000199_040 Hb_003777_120--Hb_000199_040 Hb_000002_370 Hb_000002_370 Hb_003777_120--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_008019_010--Hb_018134_010 Hb_054926_010 Hb_054926_010 Hb_008019_010--Hb_054926_010 Hb_004040_010 Hb_004040_010 Hb_008019_010--Hb_004040_010 Hb_008019_010--Hb_111997_010 Hb_000103_370 Hb_000103_370 Hb_008019_010--Hb_000103_370 Hb_059429_010 Hb_059429_010 Hb_000049_030--Hb_059429_010 Hb_115962_010 Hb_115962_010 Hb_000049_030--Hb_115962_010 Hb_001983_040 Hb_001983_040 Hb_000049_030--Hb_001983_040 Hb_000438_200 Hb_000438_200 Hb_000049_030--Hb_000438_200 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.3201 50.2196 20.1239 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1351 0 0 1.14761 20.0222

CAGE analysis