Hb_059429_010

Information

Type -
Description -
Location Contig59429: 314-808
Sequence    

Annotation

kegg
ID rcu:RCOM_0210880
description Root phototropism protein, putative
nr
ID XP_012077861.1
description PREDICTED: root phototropism protein 2 [Jatropha curcas]
swissprot
ID Q682S0
description Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2
trembl
ID A0A067LEM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17285 PE=4 SV=1
Gene Ontology
ID GO:0005634
description root phototropism protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059429_010 0.0 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
2 Hb_001983_040 0.0465311102 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
3 Hb_010422_020 0.0626175233 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
4 Hb_000049_030 0.0751741374 - - conserved hypothetical protein [Ricinus communis]
5 Hb_032731_010 0.0917361032 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
6 Hb_001913_070 0.0982151422 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_007007_100 0.1080396287 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
8 Hb_059318_010 0.1148819261 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_005890_010 0.1165332647 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
10 Hb_006501_080 0.1175299069 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
11 Hb_000809_220 0.1190492689 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
12 Hb_004308_030 0.1222743626 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
13 Hb_001926_020 0.1230359518 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
14 Hb_104014_010 0.1234022336 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
15 Hb_006620_030 0.1263258609 - - nitrate reductase, putative [Ricinus communis]
16 Hb_001680_020 0.1281244193 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
17 Hb_029262_010 0.1290938665 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
18 Hb_000890_170 0.1306088612 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
19 Hb_074966_010 0.1315566913 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_005488_210 0.1318852607 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_059429_010 Hb_059429_010 Hb_001983_040 Hb_001983_040 Hb_059429_010--Hb_001983_040 Hb_010422_020 Hb_010422_020 Hb_059429_010--Hb_010422_020 Hb_000049_030 Hb_000049_030 Hb_059429_010--Hb_000049_030 Hb_032731_010 Hb_032731_010 Hb_059429_010--Hb_032731_010 Hb_001913_070 Hb_001913_070 Hb_059429_010--Hb_001913_070 Hb_007007_100 Hb_007007_100 Hb_059429_010--Hb_007007_100 Hb_001983_040--Hb_010422_020 Hb_001983_040--Hb_001913_070 Hb_001983_040--Hb_000049_030 Hb_000809_220 Hb_000809_220 Hb_001983_040--Hb_000809_220 Hb_000051_150 Hb_000051_150 Hb_001983_040--Hb_000051_150 Hb_010422_020--Hb_001913_070 Hb_010422_020--Hb_000051_150 Hb_104014_010 Hb_104014_010 Hb_010422_020--Hb_104014_010 Hb_010422_020--Hb_000809_220 Hb_059318_010 Hb_059318_010 Hb_000049_030--Hb_059318_010 Hb_115962_010 Hb_115962_010 Hb_000049_030--Hb_115962_010 Hb_000438_200 Hb_000438_200 Hb_000049_030--Hb_000438_200 Hb_029262_010 Hb_029262_010 Hb_000049_030--Hb_029262_010 Hb_032731_010--Hb_059318_010 Hb_074966_010 Hb_074966_010 Hb_032731_010--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_032731_010--Hb_001926_020 Hb_001926_070 Hb_001926_070 Hb_032731_010--Hb_001926_070 Hb_003777_120 Hb_003777_120 Hb_032731_010--Hb_003777_120 Hb_001606_010 Hb_001606_010 Hb_032731_010--Hb_001606_010 Hb_001913_070--Hb_104014_010 Hb_149985_030 Hb_149985_030 Hb_001913_070--Hb_149985_030 Hb_001913_070--Hb_000809_220 Hb_000349_170 Hb_000349_170 Hb_001913_070--Hb_000349_170 Hb_005488_210 Hb_005488_210 Hb_007007_100--Hb_005488_210 Hb_000007_330 Hb_000007_330 Hb_007007_100--Hb_000007_330 Hb_000890_170 Hb_000890_170 Hb_007007_100--Hb_000890_170 Hb_000313_250 Hb_000313_250 Hb_007007_100--Hb_000313_250 Hb_000236_130 Hb_000236_130 Hb_007007_100--Hb_000236_130 Hb_006620_030 Hb_006620_030 Hb_007007_100--Hb_006620_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 21.6213 101.804 27.3287 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.214395 0 0.0892122 34.5913

CAGE analysis