Hb_059464_010

Information

Type -
Description -
Location Contig59464: 175-921
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_002525845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059464_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_135611_010 0.1638254458 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
3 Hb_000317_060 0.1824864237 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
4 Hb_000172_540 0.182911037 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
5 Hb_000139_230 0.1832451003 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
6 Hb_004545_170 0.187286096 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
7 Hb_000640_100 0.1879993486 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000070_030 0.1929766789 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
9 Hb_013016_020 0.1945308551 - - Disease resistance protein RPS2, putative [Ricinus communis]
10 Hb_011689_060 0.1946742946 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
11 Hb_000922_140 0.1946830095 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
12 Hb_001900_120 0.1968438604 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
13 Hb_000516_040 0.1976565413 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
14 Hb_001953_150 0.1987512428 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
15 Hb_000983_160 0.2009960524 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
16 Hb_001898_090 0.2031881917 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
17 Hb_004195_060 0.2032041768 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
18 Hb_009620_030 0.2035234868 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
19 Hb_117552_010 0.2047192058 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000010_390 0.2053520787 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]

Gene co-expression network

sample Hb_059464_010 Hb_059464_010 Hb_135611_010 Hb_135611_010 Hb_059464_010--Hb_135611_010 Hb_000317_060 Hb_000317_060 Hb_059464_010--Hb_000317_060 Hb_000172_540 Hb_000172_540 Hb_059464_010--Hb_000172_540 Hb_000139_230 Hb_000139_230 Hb_059464_010--Hb_000139_230 Hb_004545_170 Hb_004545_170 Hb_059464_010--Hb_004545_170 Hb_000640_100 Hb_000640_100 Hb_059464_010--Hb_000640_100 Hb_148909_010 Hb_148909_010 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000516_040 Hb_000516_040 Hb_135611_010--Hb_000516_040 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_001900_120 Hb_001900_120 Hb_135611_010--Hb_001900_120 Hb_001953_150 Hb_001953_150 Hb_000317_060--Hb_001953_150 Hb_005054_190 Hb_005054_190 Hb_000317_060--Hb_005054_190 Hb_080147_040 Hb_080147_040 Hb_000317_060--Hb_080147_040 Hb_000922_140 Hb_000922_140 Hb_000317_060--Hb_000922_140 Hb_003430_030 Hb_003430_030 Hb_000317_060--Hb_003430_030 Hb_011918_050 Hb_011918_050 Hb_000317_060--Hb_011918_050 Hb_029904_020 Hb_029904_020 Hb_000172_540--Hb_029904_020 Hb_001021_220 Hb_001021_220 Hb_000172_540--Hb_001021_220 Hb_003104_040 Hb_003104_040 Hb_000172_540--Hb_003104_040 Hb_029866_100 Hb_029866_100 Hb_000172_540--Hb_029866_100 Hb_000983_160 Hb_000983_160 Hb_000172_540--Hb_000983_160 Hb_003398_100 Hb_003398_100 Hb_000172_540--Hb_003398_100 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_000139_230--Hb_029904_020 Hb_000935_090 Hb_000935_090 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000879_160 Hb_000879_160 Hb_000139_230--Hb_000879_160 Hb_004223_290 Hb_004223_290 Hb_004545_170--Hb_004223_290 Hb_002044_050 Hb_002044_050 Hb_004545_170--Hb_002044_050 Hb_011344_020 Hb_011344_020 Hb_004545_170--Hb_011344_020 Hb_000261_100 Hb_000261_100 Hb_004545_170--Hb_000261_100 Hb_001401_060 Hb_001401_060 Hb_004545_170--Hb_001401_060 Hb_004875_030 Hb_004875_030 Hb_004545_170--Hb_004875_030 Hb_002909_090 Hb_002909_090 Hb_000640_100--Hb_002909_090 Hb_000640_100--Hb_000261_100 Hb_004545_090 Hb_004545_090 Hb_000640_100--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_000640_100--Hb_000780_190 Hb_008024_030 Hb_008024_030 Hb_000640_100--Hb_008024_030 Hb_127552_040 Hb_127552_040 Hb_000640_100--Hb_127552_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.555379 0.201687 0.141229 0.147358 0.209989 0.233393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862187 0 0.120288 0.27633 0.266532

CAGE analysis