Hb_059480_010

Information

Type -
Description -
Location Contig59480: 5711-6691
Sequence    

Annotation

kegg
ID rcu:RCOM_1437280
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative (EC:2.4.1.186)
nr
ID XP_002512611.1
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
swissprot
ID Q9FFD2
description Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1
trembl
ID B9RFU2
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1437280 PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable udp-arabinopyranose mutase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50379: 5622-5971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059480_010 0.0 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
2 Hb_084247_010 0.1028022084 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000522_150 0.1033076564 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
4 Hb_002445_060 0.1048002978 - - arf gtpase-activating protein, putative [Ricinus communis]
5 Hb_003929_170 0.1062216383 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
6 Hb_000107_230 0.1067213184 - - unknown [Medicago truncatula]
7 Hb_004052_040 0.1077719884 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_000249_070 0.1097213589 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
9 Hb_000510_300 0.1101566572 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_000115_080 0.1120944894 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
11 Hb_000207_150 0.1125372321 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
12 Hb_006502_060 0.1126575892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001357_150 0.113634418 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
14 Hb_004607_090 0.1139878009 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
15 Hb_000167_080 0.1143645649 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
16 Hb_000362_180 0.1152604881 - - Pdap1 [Gossypium arboreum]
17 Hb_004452_110 0.1155079905 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
18 Hb_000028_370 0.1158515852 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
19 Hb_002205_110 0.1160908528 - - conserved hypothetical protein [Ricinus communis]
20 Hb_169631_010 0.1170808421 - - MADS-box transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_059480_010 Hb_059480_010 Hb_084247_010 Hb_084247_010 Hb_059480_010--Hb_084247_010 Hb_000522_150 Hb_000522_150 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_003929_170 Hb_003929_170 Hb_059480_010--Hb_003929_170 Hb_000107_230 Hb_000107_230 Hb_059480_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_059480_010--Hb_004052_040 Hb_012395_170 Hb_012395_170 Hb_084247_010--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_084247_010--Hb_005276_060 Hb_005162_090 Hb_005162_090 Hb_084247_010--Hb_005162_090 Hb_001124_010 Hb_001124_010 Hb_084247_010--Hb_001124_010 Hb_003929_070 Hb_003929_070 Hb_084247_010--Hb_003929_070 Hb_013575_010 Hb_013575_010 Hb_084247_010--Hb_013575_010 Hb_000738_020 Hb_000738_020 Hb_000522_150--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_005271_220 Hb_005271_220 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_000010_110 Hb_000010_110 Hb_000522_150--Hb_000010_110 Hb_000215_300 Hb_000215_300 Hb_002445_060--Hb_000215_300 Hb_006059_040 Hb_006059_040 Hb_002445_060--Hb_006059_040 Hb_000140_290 Hb_000140_290 Hb_002445_060--Hb_000140_290 Hb_006588_170 Hb_006588_170 Hb_002445_060--Hb_006588_170 Hb_004705_170 Hb_004705_170 Hb_002445_060--Hb_004705_170 Hb_003177_020 Hb_003177_020 Hb_002445_060--Hb_003177_020 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_003929_170--Hb_000107_230 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_006478_020 Hb_006478_020 Hb_004052_040--Hb_006478_020 Hb_169631_010 Hb_169631_010 Hb_004052_040--Hb_169631_010 Hb_000249_070 Hb_000249_070 Hb_004052_040--Hb_000249_070 Hb_004191_020 Hb_004191_020 Hb_004052_040--Hb_004191_020 Hb_002685_110 Hb_002685_110 Hb_004052_040--Hb_002685_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5168 20.872 19.6716 37.4647 9.01095 23.385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9903 21.4315 13.2074 11.8911 16.262

CAGE analysis