Hb_059502_010

Information

Type -
Description -
Location Contig59502: 3156-5978
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23790g
description POPTRDRAFT_822609; oxidoreductase family protein
nr
ID XP_012090370.1
description PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID A0A067LL31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01564 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50380: 4335-5667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059502_010 0.0 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
2 Hb_000531_010 0.0426301144 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
3 Hb_007304_020 0.0700469299 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
4 Hb_004598_020 0.0805287258 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
5 Hb_033312_100 0.0811191993 - - -
6 Hb_180864_010 0.0876943846 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
7 Hb_001247_060 0.0883117565 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002025_280 0.0894978128 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
9 Hb_010589_090 0.0967468223 - - Snakin-1 [Glycine soja]
10 Hb_000089_090 0.098733988 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
11 Hb_002766_070 0.1045500031 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
12 Hb_001242_170 0.1081157055 - - conserved hypothetical protein [Ricinus communis]
13 Hb_085600_010 0.1096688029 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
14 Hb_000962_060 0.1188956119 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
15 Hb_003082_090 0.1235590842 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
16 Hb_012092_040 0.1242643793 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
17 Hb_070266_010 0.1256686776 - - LRR.XII-like protein, partial [Platanus x acerifolia]
18 Hb_000035_230 0.1257804824 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
19 Hb_046204_010 0.1261143287 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
20 Hb_000422_040 0.1272962695 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]

Gene co-expression network

sample Hb_059502_010 Hb_059502_010 Hb_000531_010 Hb_000531_010 Hb_059502_010--Hb_000531_010 Hb_007304_020 Hb_007304_020 Hb_059502_010--Hb_007304_020 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_033312_100 Hb_033312_100 Hb_059502_010--Hb_033312_100 Hb_180864_010 Hb_180864_010 Hb_059502_010--Hb_180864_010 Hb_001247_060 Hb_001247_060 Hb_059502_010--Hb_001247_060 Hb_002025_280 Hb_002025_280 Hb_000531_010--Hb_002025_280 Hb_000531_010--Hb_033312_100 Hb_002766_070 Hb_002766_070 Hb_000531_010--Hb_002766_070 Hb_000531_010--Hb_180864_010 Hb_085600_010 Hb_085600_010 Hb_000531_010--Hb_085600_010 Hb_046204_010 Hb_046204_010 Hb_007304_020--Hb_046204_010 Hb_010589_090 Hb_010589_090 Hb_007304_020--Hb_010589_090 Hb_007304_020--Hb_000531_010 Hb_007304_020--Hb_033312_100 Hb_007304_020--Hb_001247_060 Hb_003082_090 Hb_003082_090 Hb_004598_020--Hb_003082_090 Hb_070266_010 Hb_070266_010 Hb_004598_020--Hb_070266_010 Hb_004598_020--Hb_180864_010 Hb_002217_400 Hb_002217_400 Hb_004598_020--Hb_002217_400 Hb_002267_110 Hb_002267_110 Hb_004598_020--Hb_002267_110 Hb_000028_450 Hb_000028_450 Hb_004598_020--Hb_000028_450 Hb_033312_100--Hb_002025_280 Hb_033312_100--Hb_002766_070 Hb_000422_040 Hb_000422_040 Hb_033312_100--Hb_000422_040 Hb_033312_100--Hb_046204_010 Hb_001242_170 Hb_001242_170 Hb_180864_010--Hb_001242_170 Hb_180864_010--Hb_085600_010 Hb_000984_280 Hb_000984_280 Hb_180864_010--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_180864_010--Hb_000732_200 Hb_180864_010--Hb_003082_090 Hb_000089_090 Hb_000089_090 Hb_001247_060--Hb_000089_090 Hb_012092_040 Hb_012092_040 Hb_001247_060--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_001247_060--Hb_000035_230 Hb_001247_060--Hb_000531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.24934 0.34153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0279437 0

CAGE analysis