Hb_059554_010

Information

Type -
Description -
Location Contig59554: 2322-2897
Sequence    

Annotation

kegg
ID rcu:RCOM_0813640
description Polcalcin Jun o, putative (EC:1.3.1.74)
nr
ID XP_012066881.1
description PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQE6
description Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1
trembl
ID B9RYI9
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_0813640 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059554_010 0.0 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
2 Hb_000357_140 0.1191272574 - - hypothetical protein JCGZ_15089 [Jatropha curcas]
3 Hb_017908_010 0.169664051 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015934_050 0.1913491134 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
5 Hb_002045_080 0.1980714306 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
6 Hb_001105_120 0.2037483008 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
7 Hb_133279_010 0.2101588208 - - spermidine synthase 1, putative [Ricinus communis]
8 Hb_000389_040 0.2219248478 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
9 Hb_000107_280 0.2241732478 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_001673_090 0.2401873001 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
11 Hb_012090_030 0.2418108595 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
12 Hb_004686_040 0.250236501 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
13 Hb_000134_190 0.2510963902 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
14 Hb_025193_010 0.2517021293 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
15 Hb_003164_010 0.2521610308 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_000020_170 0.2534371926 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
17 Hb_023582_030 0.2540512833 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000109_200 0.2541276056 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
19 Hb_029883_010 0.2552685316 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_000140_320 0.2568022773 - - delta-8 sphingolipid desaturase [Vernicia fordii]

Gene co-expression network

sample Hb_059554_010 Hb_059554_010 Hb_000357_140 Hb_000357_140 Hb_059554_010--Hb_000357_140 Hb_017908_010 Hb_017908_010 Hb_059554_010--Hb_017908_010 Hb_015934_050 Hb_015934_050 Hb_059554_010--Hb_015934_050 Hb_002045_080 Hb_002045_080 Hb_059554_010--Hb_002045_080 Hb_001105_120 Hb_001105_120 Hb_059554_010--Hb_001105_120 Hb_133279_010 Hb_133279_010 Hb_059554_010--Hb_133279_010 Hb_000357_140--Hb_017908_010 Hb_000357_140--Hb_015934_050 Hb_000107_280 Hb_000107_280 Hb_000357_140--Hb_000107_280 Hb_000020_170 Hb_000020_170 Hb_000357_140--Hb_000020_170 Hb_000109_200 Hb_000109_200 Hb_000357_140--Hb_000109_200 Hb_000363_390 Hb_000363_390 Hb_017908_010--Hb_000363_390 Hb_017908_010--Hb_001105_120 Hb_017908_010--Hb_015934_050 Hb_017908_010--Hb_000107_280 Hb_162472_010 Hb_162472_010 Hb_017908_010--Hb_162472_010 Hb_000815_050 Hb_000815_050 Hb_015934_050--Hb_000815_050 Hb_000140_320 Hb_000140_320 Hb_015934_050--Hb_000140_320 Hb_002740_140 Hb_002740_140 Hb_015934_050--Hb_002740_140 Hb_002311_030 Hb_002311_030 Hb_015934_050--Hb_002311_030 Hb_023582_030 Hb_023582_030 Hb_015934_050--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_015934_050--Hb_000742_070 Hb_001728_120 Hb_001728_120 Hb_002045_080--Hb_001728_120 Hb_001488_190 Hb_001488_190 Hb_002045_080--Hb_001488_190 Hb_002173_050 Hb_002173_050 Hb_002045_080--Hb_002173_050 Hb_012090_030 Hb_012090_030 Hb_002045_080--Hb_012090_030 Hb_003164_010 Hb_003164_010 Hb_002045_080--Hb_003164_010 Hb_132840_150 Hb_132840_150 Hb_001105_120--Hb_132840_150 Hb_000417_090 Hb_000417_090 Hb_001105_120--Hb_000417_090 Hb_000190_170 Hb_000190_170 Hb_001105_120--Hb_000190_170 Hb_004117_090 Hb_004117_090 Hb_001105_120--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_001105_120--Hb_010381_100 Hb_133279_010--Hb_012090_030 Hb_000389_040 Hb_000389_040 Hb_133279_010--Hb_000389_040 Hb_002498_030 Hb_002498_030 Hb_133279_010--Hb_002498_030 Hb_000574_300 Hb_000574_300 Hb_133279_010--Hb_000574_300 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.290836 0.630167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.146643 0 0.162174

CAGE analysis