Hb_059780_010

Information

Type -
Description -
Location Contig59780: 7197-8826
Sequence    

Annotation

kegg
ID bvg:104885482
description uncharacterized LOC104885482
nr
ID XP_010668470.1
description PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A072TDQ8
description Uncharacterized protein (Fragment) OS=Medicago truncatula GN=MTR_0860s0010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059780_010 0.0 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
2 Hb_145211_010 0.0546959068 - - hypothetical protein M569_05648, partial [Genlisea aurea]
3 Hb_000675_040 0.0617338814 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
4 Hb_121441_010 0.0882505471 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_002566_010 0.0951396487 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
6 Hb_000982_120 0.0962512597 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
7 Hb_031931_030 0.1373340098 - - lipid binding protein, putative [Ricinus communis]
8 Hb_007676_060 0.1420891744 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
9 Hb_000149_090 0.1428087541 - - -
10 Hb_002122_050 0.1456813702 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000644_040 0.1545998325 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
12 Hb_000946_030 0.1647995328 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
13 Hb_010761_030 0.171749337 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002555_030 0.1752094376 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
15 Hb_001597_090 0.1828942867 - - -
16 Hb_029769_010 0.1832377192 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
17 Hb_131320_010 0.1835519728 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_170878_060 0.1862368314 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
19 Hb_135554_010 0.188118281 - - Insulin-degrading enzyme, putative [Ricinus communis]
20 Hb_000009_430 0.1895065158 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_059780_010 Hb_059780_010 Hb_145211_010 Hb_145211_010 Hb_059780_010--Hb_145211_010 Hb_000675_040 Hb_000675_040 Hb_059780_010--Hb_000675_040 Hb_121441_010 Hb_121441_010 Hb_059780_010--Hb_121441_010 Hb_002566_010 Hb_002566_010 Hb_059780_010--Hb_002566_010 Hb_000982_120 Hb_000982_120 Hb_059780_010--Hb_000982_120 Hb_031931_030 Hb_031931_030 Hb_059780_010--Hb_031931_030 Hb_145211_010--Hb_000675_040 Hb_145211_010--Hb_002566_010 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_145211_010--Hb_121441_010 Hb_002122_050 Hb_002122_050 Hb_145211_010--Hb_002122_050 Hb_000675_040--Hb_121441_010 Hb_131320_010 Hb_131320_010 Hb_000675_040--Hb_131320_010 Hb_000675_040--Hb_002122_050 Hb_007676_060 Hb_007676_060 Hb_000675_040--Hb_007676_060 Hb_000149_090 Hb_000149_090 Hb_121441_010--Hb_000149_090 Hb_121441_010--Hb_000982_120 Hb_121441_010--Hb_002566_010 Hb_002566_010--Hb_000982_120 Hb_002566_010--Hb_031931_030 Hb_010761_030 Hb_010761_030 Hb_002566_010--Hb_010761_030 Hb_002566_010--Hb_000149_090 Hb_000982_120--Hb_031931_030 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_000982_120--Hb_145211_010 Hb_031931_030--Hb_010761_030 Hb_029769_010 Hb_029769_010 Hb_031931_030--Hb_029769_010 Hb_008692_020 Hb_008692_020 Hb_031931_030--Hb_008692_020 Hb_130563_010 Hb_130563_010 Hb_031931_030--Hb_130563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0309649 0 0.0522984 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.179774 0.110939

CAGE analysis