Hb_059952_010

Information

Type -
Description -
Location Contig59952: 840-1106
Sequence    

Annotation

kegg
ID egr:104419118
description probable protein S-acyltransferase 7
nr
ID XP_010028971.1
description PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
swissprot
ID Q0WQK2
description Probable protein S-acyltransferase 7 OS=Arabidopsis thaliana GN=PAT07 PE=1 SV=1
trembl
ID A0A059AQV7
description S-acyltransferase OS=Eucalyptus grandis GN=EUGRSUZ_I01621 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059952_010 0.0 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
2 Hb_122567_020 0.1478638433 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
3 Hb_004958_040 0.1505391543 - - -
4 Hb_005933_010 0.1600580217 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_000805_300 0.16095108 - - -
6 Hb_001454_110 0.1679397712 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_001385_080 0.1716866252 - - -
8 Hb_001235_060 0.1822640288 - - -
9 Hb_145827_010 0.1824793174 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
10 Hb_001579_040 0.1869017628 - - -
11 Hb_032531_040 0.2013251611 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
12 Hb_001907_090 0.211657962 - - -
13 Hb_000291_130 0.2199124649 - - -
14 Hb_187459_010 0.2207918923 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
15 Hb_003927_150 0.2212614182 - - -
16 Hb_005839_010 0.2244646922 - - 30S ribosomal protein s13 [Camellia sinensis]
17 Hb_001385_090 0.226105287 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
18 Hb_000059_090 0.2293537835 - - -
19 Hb_000316_090 0.2297451583 - - -
20 Hb_000248_030 0.2307905761 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]

Gene co-expression network

sample Hb_059952_010 Hb_059952_010 Hb_122567_020 Hb_122567_020 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_005933_010 Hb_005933_010 Hb_059952_010--Hb_005933_010 Hb_000805_300 Hb_000805_300 Hb_059952_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_059952_010--Hb_001454_110 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_004958_040--Hb_122567_020 Hb_001907_090 Hb_001907_090 Hb_004958_040--Hb_001907_090 Hb_004958_040--Hb_005933_010 Hb_004958_040--Hb_000617_170 Hb_004958_040--Hb_000805_300 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_000805_300--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_001454_110--Hb_032531_040 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_001385_080--Hb_005933_010 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4043 7.93777 2.85984 65.594 28.0245 561.139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3643 20.6845 0.539066 0.189604 0

CAGE analysis