Hb_059978_010

Information

Type -
Description -
Location Contig59978: 63-439
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074441.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9HAN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07230g PE=4 SV=2
Gene Ontology
ID GO:0005506
description choline monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059978_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_005928_070 0.1871752374 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
3 Hb_001712_080 0.2120659337 - - -
4 Hb_021888_040 0.2273473899 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
5 Hb_013394_100 0.2289075193 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
6 Hb_002379_040 0.2312488796 - - -
7 Hb_002079_040 0.2374846212 - - hypothetical protein VITISV_018542 [Vitis vinifera]
8 Hb_095192_010 0.2383895381 - - hypothetical protein VITISV_043980 [Vitis vinifera]
9 Hb_012675_080 0.2384447067 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
10 Hb_007763_050 0.2400008368 - - hypothetical protein L484_012752 [Morus notabilis]
11 Hb_000789_150 0.2453102513 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_002918_190 0.2490041898 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
13 Hb_002168_010 0.2522084937 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
14 Hb_099298_010 0.2541699756 - - -
15 Hb_011200_010 0.2570574412 - - -
16 Hb_003551_010 0.257316074 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
17 Hb_000034_090 0.259231908 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
18 Hb_000015_070 0.270490692 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
19 Hb_150766_020 0.2730497177 - - hypothetical protein VITISV_030841 [Vitis vinifera]
20 Hb_000289_080 0.2732655236 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_059978_010 Hb_059978_010 Hb_005928_070 Hb_005928_070 Hb_059978_010--Hb_005928_070 Hb_001712_080 Hb_001712_080 Hb_059978_010--Hb_001712_080 Hb_021888_040 Hb_021888_040 Hb_059978_010--Hb_021888_040 Hb_013394_100 Hb_013394_100 Hb_059978_010--Hb_013394_100 Hb_002379_040 Hb_002379_040 Hb_059978_010--Hb_002379_040 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040 Hb_005928_070--Hb_001712_080 Hb_005928_070--Hb_002379_040 Hb_006995_010 Hb_006995_010 Hb_005928_070--Hb_006995_010 Hb_000289_080 Hb_000289_080 Hb_005928_070--Hb_000289_080 Hb_120052_010 Hb_120052_010 Hb_005928_070--Hb_120052_010 Hb_002918_190 Hb_002918_190 Hb_001712_080--Hb_002918_190 Hb_001712_080--Hb_006995_010 Hb_005542_090 Hb_005542_090 Hb_001712_080--Hb_005542_090 Hb_007083_020 Hb_007083_020 Hb_001712_080--Hb_007083_020 Hb_021888_040--Hb_002379_040 Hb_011200_010 Hb_011200_010 Hb_021888_040--Hb_011200_010 Hb_009051_020 Hb_009051_020 Hb_021888_040--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_021888_040--Hb_003551_010 Hb_003206_100 Hb_003206_100 Hb_021888_040--Hb_003206_100 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_013394_100--Hb_002079_040 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_002379_040--Hb_011200_010 Hb_000668_020 Hb_000668_020 Hb_002379_040--Hb_000668_020 Hb_012675_080 Hb_012675_080 Hb_002379_040--Hb_012675_080 Hb_002379_040--Hb_003551_010 Hb_002078_500 Hb_002078_500 Hb_002079_040--Hb_002078_500 Hb_000034_090 Hb_000034_090 Hb_002079_040--Hb_000034_090 Hb_003030_040 Hb_003030_040 Hb_002079_040--Hb_003030_040 Hb_002079_040--Hb_012675_080 Hb_005107_020 Hb_005107_020 Hb_002079_040--Hb_005107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210599 0.661931 11.51 1.96056 10.1105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81302 3.67572 0 0 0.501171

CAGE analysis