Hb_060152_010

Information

Type -
Description -
Location Contig60152: 389-802
Sequence    

Annotation

kegg
ID rcu:RCOM_1371710
description serine-threonine protein kinase, plant-type, putative (EC:3.1.3.16)
nr
ID XP_012081229.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID C0LGQ9
description Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1
trembl
ID A0A067DLE0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042011mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060152_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_000751_060 0.0864882967 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
3 Hb_168319_060 0.0916891883 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
4 Hb_000751_070 0.0949161341 - - -
5 Hb_000645_250 0.0971140233 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
6 Hb_001622_020 0.1029263605 - - -
7 Hb_000226_110 0.1138457843 - - -
8 Hb_001369_270 0.1199597255 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000567_150 0.1206223985 - - cysteine protease, putative [Ricinus communis]
10 Hb_000847_120 0.1210261961 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
11 Hb_000373_060 0.1304068103 - - PREDICTED: extensin-3 [Camelina sativa]
12 Hb_003861_090 0.1308509368 - - adenylsulfate kinase, putative [Ricinus communis]
13 Hb_001109_170 0.1322582668 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
14 Hb_004943_010 0.1330748089 - - cationic amino acid transporter, putative [Ricinus communis]
15 Hb_000237_120 0.1350297107 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
16 Hb_000254_060 0.1350380719 - - conserved hypothetical protein [Ricinus communis]
17 Hb_110737_010 0.1351387974 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
18 Hb_019278_010 0.142535612 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
19 Hb_116190_010 0.1435434242 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
20 Hb_000000_200 0.1487047484 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]

Gene co-expression network

sample Hb_060152_010 Hb_060152_010 Hb_000751_060 Hb_000751_060 Hb_060152_010--Hb_000751_060 Hb_168319_060 Hb_168319_060 Hb_060152_010--Hb_168319_060 Hb_000751_070 Hb_000751_070 Hb_060152_010--Hb_000751_070 Hb_000645_250 Hb_000645_250 Hb_060152_010--Hb_000645_250 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110 Hb_000751_060--Hb_000645_250 Hb_000751_060--Hb_000751_070 Hb_000751_060--Hb_168319_060 Hb_146930_010 Hb_146930_010 Hb_000751_060--Hb_146930_010 Hb_000847_120 Hb_000847_120 Hb_000751_060--Hb_000847_120 Hb_007875_020 Hb_007875_020 Hb_168319_060--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_168319_060--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_029510_090 Hb_029510_090 Hb_168319_060--Hb_029510_090 Hb_000254_060 Hb_000254_060 Hb_168319_060--Hb_000254_060 Hb_000567_150 Hb_000567_150 Hb_000751_070--Hb_000567_150 Hb_000751_070--Hb_146930_010 Hb_000751_070--Hb_000645_250 Hb_001288_050 Hb_001288_050 Hb_000751_070--Hb_001288_050 Hb_000645_250--Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000645_250--Hb_008376_020 Hb_000609_020 Hb_000609_020 Hb_000645_250--Hb_000609_020 Hb_000054_130 Hb_000054_130 Hb_001622_020--Hb_000054_130 Hb_001778_040 Hb_001778_040 Hb_001622_020--Hb_001778_040 Hb_001622_020--Hb_000254_060 Hb_167211_010 Hb_167211_010 Hb_001622_020--Hb_167211_010 Hb_001622_020--Hb_168319_060 Hb_006499_020 Hb_006499_020 Hb_000226_110--Hb_006499_020 Hb_026419_010 Hb_026419_010 Hb_000226_110--Hb_026419_010 Hb_116190_010 Hb_116190_010 Hb_000226_110--Hb_116190_010 Hb_001369_270 Hb_001369_270 Hb_000226_110--Hb_001369_270 Hb_003861_090 Hb_003861_090 Hb_000226_110--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_000226_110--Hb_000373_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206801 1.30027 2.4303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.8714 3.64937

CAGE analysis