Hb_060198_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig60198: 785-3043
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0043531
description leucine-rich repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50603: 1406-1936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060198_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_000095_070 0.1029495173 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002010_070 0.1139904435 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
4 Hb_143629_200 0.1148054735 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
5 Hb_001143_140 0.1191606377 - - Aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_000465_450 0.1216935594 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_001706_020 0.1234784478 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
8 Hb_006040_170 0.1269801429 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
9 Hb_009641_040 0.1282686462 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
10 Hb_004307_070 0.1309275112 - - kinase, putative [Ricinus communis]
11 Hb_007237_010 0.1311393444 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000245_100 0.1372890932 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
13 Hb_002308_060 0.1397814821 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
14 Hb_004462_030 0.1399715566 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
15 Hb_000342_020 0.141324475 - - bel1 homeotic protein, putative [Ricinus communis]
16 Hb_000834_100 0.1436849277 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
17 Hb_000347_420 0.1459581315 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
18 Hb_026144_030 0.1474926099 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
19 Hb_004204_220 0.1476659731 - - -
20 Hb_009222_080 0.1484056913 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]

Gene co-expression network

sample Hb_060198_010 Hb_060198_010 Hb_000095_070 Hb_000095_070 Hb_060198_010--Hb_000095_070 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_143629_200 Hb_143629_200 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_000465_450 Hb_000465_450 Hb_060198_010--Hb_000465_450 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_001728_130 Hb_001728_130 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_002010_070--Hb_143629_200 Hb_002010_070--Hb_001706_020 Hb_002010_070--Hb_001143_140 Hb_144703_010 Hb_144703_010 Hb_002010_070--Hb_144703_010 Hb_001174_030 Hb_001174_030 Hb_002010_070--Hb_001174_030 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_001143_140--Hb_004307_070 Hb_012743_020 Hb_012743_020 Hb_001143_140--Hb_012743_020 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_002000_130 Hb_002000_130 Hb_001143_140--Hb_002000_130 Hb_003226_030 Hb_003226_030 Hb_001143_140--Hb_003226_030 Hb_000614_190 Hb_000614_190 Hb_001143_140--Hb_000614_190 Hb_005305_030 Hb_005305_030 Hb_000465_450--Hb_005305_030 Hb_002308_060 Hb_002308_060 Hb_000465_450--Hb_002308_060 Hb_007237_010 Hb_007237_010 Hb_000465_450--Hb_007237_010 Hb_000465_450--Hb_000959_010 Hb_004007_200 Hb_004007_200 Hb_000465_450--Hb_004007_200 Hb_001706_020--Hb_000215_290 Hb_001706_020--Hb_001174_030 Hb_005488_030 Hb_005488_030 Hb_001706_020--Hb_005488_030 Hb_001544_070 Hb_001544_070 Hb_001706_020--Hb_001544_070 Hb_000472_020 Hb_000472_020 Hb_001706_020--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00930938 2.73442 1.38195 4.37061 0.0652512 0.0437241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.189629 2.7328 4.36818

CAGE analysis