Hb_060237_020

Information

Type -
Description -
Location Contig60237: 11862-14249
Sequence    

Annotation

kegg
ID rcu:RCOM_1619760
description hypothetical protein
nr
ID XP_002512044.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SA72
description Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=3 SV=1
trembl
ID B9REA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619760 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50614: 14056-14417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060237_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008864_040 0.1431247491 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
3 Hb_000390_100 0.1502506042 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
4 Hb_000215_100 0.1562359641 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002173_020 0.1615492714 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
6 Hb_000627_180 0.1697093179 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001055_030 0.1698915826 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
8 Hb_000640_130 0.1716635956 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
9 Hb_002739_150 0.1734647094 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
10 Hb_061411_010 0.1735110929 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
11 Hb_000243_380 0.1743522722 - - PREDICTED: histone H1 [Jatropha curcas]
12 Hb_000521_170 0.1747756402 - - PREDICTED: callose synthase 1 [Jatropha curcas]
13 Hb_001638_040 0.1754423559 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
14 Hb_004108_170 0.1817253293 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004136_040 0.1819501173 - - putative protein kinase [Arabidopsis thaliana]
16 Hb_000853_030 0.1832605087 - - sucrose synthase 2 [Hevea brasiliensis]
17 Hb_005096_010 0.1863376934 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
18 Hb_000976_040 0.1865719307 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_000599_130 0.1872304665 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
20 Hb_000120_970 0.1873431505 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_060237_020 Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_060237_020--Hb_008864_040 Hb_000390_100 Hb_000390_100 Hb_060237_020--Hb_000390_100 Hb_000215_100 Hb_000215_100 Hb_060237_020--Hb_000215_100 Hb_002173_020 Hb_002173_020 Hb_060237_020--Hb_002173_020 Hb_000627_180 Hb_000627_180 Hb_060237_020--Hb_000627_180 Hb_001055_030 Hb_001055_030 Hb_060237_020--Hb_001055_030 Hb_030827_060 Hb_030827_060 Hb_008864_040--Hb_030827_060 Hb_000086_580 Hb_000086_580 Hb_008864_040--Hb_000086_580 Hb_009028_030 Hb_009028_030 Hb_008864_040--Hb_009028_030 Hb_104265_030 Hb_104265_030 Hb_008864_040--Hb_104265_030 Hb_075449_020 Hb_075449_020 Hb_008864_040--Hb_075449_020 Hb_000227_060 Hb_000227_060 Hb_000390_100--Hb_000227_060 Hb_000925_160 Hb_000925_160 Hb_000390_100--Hb_000925_160 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_002301_380 Hb_002301_380 Hb_000390_100--Hb_002301_380 Hb_000200_280 Hb_000200_280 Hb_000390_100--Hb_000200_280 Hb_000640_130 Hb_000640_130 Hb_000215_100--Hb_000640_130 Hb_000215_100--Hb_001055_030 Hb_000976_040 Hb_000976_040 Hb_000215_100--Hb_000976_040 Hb_000009_330 Hb_000009_330 Hb_000215_100--Hb_000009_330 Hb_001318_020 Hb_001318_020 Hb_000215_100--Hb_001318_020 Hb_008160_030 Hb_008160_030 Hb_000215_100--Hb_008160_030 Hb_000979_240 Hb_000979_240 Hb_002173_020--Hb_000979_240 Hb_000599_130 Hb_000599_130 Hb_002173_020--Hb_000599_130 Hb_002173_020--Hb_104265_030 Hb_065500_030 Hb_065500_030 Hb_002173_020--Hb_065500_030 Hb_003125_030 Hb_003125_030 Hb_002173_020--Hb_003125_030 Hb_001511_110 Hb_001511_110 Hb_002173_020--Hb_001511_110 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_000627_180--Hb_000925_160 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_001055_030--Hb_000009_330 Hb_001055_030--Hb_000622_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.60659 9.79637 0.51551 3.02148 3.87674 1.56924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52574 0.993723 0.834952 4.46411 1.36531

CAGE analysis