Hb_060253_010

Information

Type -
Description -
Location Contig60253: 585-2238
Sequence    

Annotation

kegg
ID rcu:RCOM_1256000
description hypothetical protein
nr
ID KDP32504.1
description hypothetical protein JCGZ_14707 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KL14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14707 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50615: 1477-2034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060253_010 0.0 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
2 Hb_003435_030 0.0543427611 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_007270_020 0.0642997064 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
4 Hb_000520_040 0.0676201426 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_000046_120 0.0703305912 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_000212_410 0.0722405088 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
7 Hb_009788_020 0.0742210305 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
8 Hb_000329_440 0.0769985533 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
9 Hb_001098_040 0.0770403791 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
10 Hb_000627_050 0.0792527801 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
11 Hb_005337_100 0.0797623274 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
12 Hb_000500_240 0.0804387491 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001750_020 0.0879265525 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
14 Hb_005694_160 0.0912201143 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000703_120 0.091239167 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
16 Hb_004835_020 0.0933139934 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
17 Hb_102179_010 0.0951746453 - - protein binding protein, putative [Ricinus communis]
18 Hb_002702_010 0.0952387349 - - carbohydrate binding protein, putative [Ricinus communis]
19 Hb_016093_030 0.0954977008 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_002835_310 0.0955745111 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_060253_010 Hb_060253_010 Hb_003435_030 Hb_003435_030 Hb_060253_010--Hb_003435_030 Hb_007270_020 Hb_007270_020 Hb_060253_010--Hb_007270_020 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000046_120 Hb_000046_120 Hb_060253_010--Hb_000046_120 Hb_000212_410 Hb_000212_410 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020 Hb_003435_030--Hb_000046_120 Hb_010136_010 Hb_010136_010 Hb_003435_030--Hb_010136_010 Hb_001942_010 Hb_001942_010 Hb_003435_030--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_003435_030--Hb_018591_020 Hb_002702_010 Hb_002702_010 Hb_003435_030--Hb_002702_010 Hb_007270_020--Hb_000212_410 Hb_007270_020--Hb_009788_020 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_000500_240 Hb_000500_240 Hb_000520_040--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_000520_040--Hb_001047_210 Hb_000329_440 Hb_000329_440 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_000046_120--Hb_001942_010 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_000212_410--Hb_000627_050 Hb_000212_410--Hb_009788_020 Hb_000212_410--Hb_000703_120 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_009788_020--Hb_000703_120 Hb_009788_020--Hb_000627_050 Hb_001488_420 Hb_001488_420 Hb_009788_020--Hb_001488_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113849 0.582185 0.543991 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0648393 0.736302

CAGE analysis