Hb_060300_010

Information

Type -
Description -
Location Contig60300: 17-494
Sequence    

Annotation

kegg
ID -
description -
nr
ID KHG15076.1
description hypothetical protein F383_16817 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060300_010 0.0 - - hypothetical protein F383_16817 [Gossypium arboreum]
2 Hb_001988_040 0.0005912167 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
3 Hb_011980_030 0.0024426908 - - conserved hypothetical protein [Ricinus communis]
4 Hb_098361_010 0.0041249216 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
5 Hb_000832_260 0.0041722239 - - Protein gar2, putative [Ricinus communis]
6 Hb_109050_010 0.0041722239 - - -
7 Hb_000581_070 0.0045837148 - - -
8 Hb_007668_030 0.0051162539 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
9 Hb_001821_040 0.0070895244 - - -
10 Hb_000698_050 0.0082769734 - - -
11 Hb_007120_110 0.0083714135 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_002189_020 0.0092895892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_060997_010 0.0092895892 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
14 Hb_001461_030 0.0104643958 - - -
15 Hb_027970_010 0.0104781995 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
16 Hb_024415_010 0.0109780836 - - -
17 Hb_004048_040 0.0121964512 - - -
18 Hb_000573_080 0.0125423393 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
19 Hb_186580_020 0.0130555397 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
20 Hb_047399_010 0.0133845209 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]

Gene co-expression network

sample Hb_060300_010 Hb_060300_010 Hb_001988_040 Hb_001988_040 Hb_060300_010--Hb_001988_040 Hb_011980_030 Hb_011980_030 Hb_060300_010--Hb_011980_030 Hb_098361_010 Hb_098361_010 Hb_060300_010--Hb_098361_010 Hb_000832_260 Hb_000832_260 Hb_060300_010--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_060300_010--Hb_109050_010 Hb_000581_070 Hb_000581_070 Hb_060300_010--Hb_000581_070 Hb_001988_040--Hb_011980_030 Hb_001988_040--Hb_098361_010 Hb_001988_040--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_001988_040--Hb_007668_030 Hb_001988_040--Hb_000832_260 Hb_011980_030--Hb_000832_260 Hb_011980_030--Hb_109050_010 Hb_001821_040 Hb_001821_040 Hb_011980_030--Hb_001821_040 Hb_000698_050 Hb_000698_050 Hb_011980_030--Hb_000698_050 Hb_098361_010--Hb_000581_070 Hb_098361_010--Hb_007668_030 Hb_007120_110 Hb_007120_110 Hb_098361_010--Hb_007120_110 Hb_001461_030 Hb_001461_030 Hb_098361_010--Hb_001461_030 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050 Hb_000581_070--Hb_007668_030 Hb_000581_070--Hb_007120_110 Hb_000581_070--Hb_001461_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0474525 0.210227

CAGE analysis