Hb_060437_010

Information

Type -
Description -
Location Contig60437: 2199-5901
Sequence    

Annotation

kegg
ID cit:102620088
description E3 ubiquitin-protein ligase At4g11680-like
nr
ID XP_010111279.1
description E3 ubiquitin protein ligase RIE1 [Morus notabilis]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID W9SW15
description E3 ubiquitin protein ligase RIE1 OS=Morus notabilis GN=L484_027932 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase at4g11680-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50731: 3683-5434 , PASA_asmbl_50732: 3761-5893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060437_010 0.0 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
2 Hb_001034_020 0.0703818718 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
3 Hb_003050_090 0.0728587787 - - lupus la ribonucleoprotein, putative [Ricinus communis]
4 Hb_012760_200 0.0870220204 - - protein phsophatase-2a, putative [Ricinus communis]
5 Hb_001178_060 0.0871819732 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
6 Hb_000025_750 0.0906035199 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
7 Hb_000640_210 0.0946700236 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
8 Hb_000173_370 0.0957063131 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
9 Hb_000692_170 0.096643874 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
10 Hb_000076_290 0.0984453245 - - translation factor sui1, putative [Ricinus communis]
11 Hb_025048_040 0.0992570674 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
12 Hb_001259_030 0.0995442895 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
13 Hb_004032_460 0.1008560707 - - -
14 Hb_005016_030 0.1011085757 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
15 Hb_000331_480 0.1011996341 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
16 Hb_004032_350 0.1032374108 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
17 Hb_000322_170 0.1032831723 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
18 Hb_002025_140 0.1040807675 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_000849_150 0.1040839008 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
20 Hb_005028_010 0.1051457916 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_060437_010 Hb_060437_010 Hb_001034_020 Hb_001034_020 Hb_060437_010--Hb_001034_020 Hb_003050_090 Hb_003050_090 Hb_060437_010--Hb_003050_090 Hb_012760_200 Hb_012760_200 Hb_060437_010--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_060437_010--Hb_001178_060 Hb_000025_750 Hb_000025_750 Hb_060437_010--Hb_000025_750 Hb_000640_210 Hb_000640_210 Hb_060437_010--Hb_000640_210 Hb_000331_480 Hb_000331_480 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_003050_090--Hb_001034_020 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_001259_030 Hb_001259_030 Hb_003050_090--Hb_001259_030 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480 Hb_005016_030 Hb_005016_030 Hb_001178_060--Hb_005016_030 Hb_000322_170 Hb_000322_170 Hb_001178_060--Hb_000322_170 Hb_001178_060--Hb_000640_210 Hb_000076_290 Hb_000076_290 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_001227_110 Hb_001227_110 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_001408_090 Hb_001408_090 Hb_000025_750--Hb_001408_090 Hb_000692_170 Hb_000692_170 Hb_000025_750--Hb_000692_170 Hb_000093_130 Hb_000093_130 Hb_000025_750--Hb_000093_130 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000640_210--Hb_000322_170 Hb_000640_210--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000640_210--Hb_000174_200 Hb_000640_210--Hb_005028_010 Hb_000640_210--Hb_012760_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
280.996 73.4291 14.636 12.6874 216.832 180.681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.9016 36.3834 56.568 31.7482 6.85484

CAGE analysis