Hb_060585_010

Information

Type -
Description -
Location Contig60585: 276-934
Sequence    

Annotation

kegg
ID cic:CICLE_v10010591mg
description hypothetical protein
nr
ID CDP03024.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9XED7
description DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
trembl
ID A0A068U4E1
description Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041494001 PE=3 SV=1
Gene Ontology
ID GO:0000166
description dna repair protein rad51 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060585_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_030885_020 0.2327814969 - - -
3 Hb_122741_010 0.2363281434 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
4 Hb_001916_010 0.2429139111 - - hypothetical protein VITISV_021527 [Vitis vinifera]
5 Hb_003551_040 0.2534158444 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
6 Hb_154381_010 0.2541965164 - - -
7 Hb_012539_090 0.2545149761 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
8 Hb_004907_040 0.2555840779 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
9 Hb_001832_220 0.2601432572 - - -
10 Hb_009803_010 0.2809842362 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
11 Hb_000134_100 0.2823831562 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
12 Hb_007416_080 0.2824556272 - - -
13 Hb_099990_020 0.2864148115 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
14 Hb_004770_060 0.2875736296 - - unnamed protein product, partial [Coffea canephora]
15 Hb_001890_030 0.2916870545 - - -
16 Hb_002368_090 0.2953016282 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
17 Hb_158296_010 0.2957392953 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
18 Hb_000085_130 0.2987941542 - - -
19 Hb_000244_140 0.3011931071 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
20 Hb_010367_020 0.3104915245 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_060585_010 Hb_060585_010 Hb_030885_020 Hb_030885_020 Hb_060585_010--Hb_030885_020 Hb_122741_010 Hb_122741_010 Hb_060585_010--Hb_122741_010 Hb_001916_010 Hb_001916_010 Hb_060585_010--Hb_001916_010 Hb_003551_040 Hb_003551_040 Hb_060585_010--Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_060585_010--Hb_154381_010 Hb_012539_090 Hb_012539_090 Hb_060585_010--Hb_012539_090 Hb_030885_020--Hb_154381_010 Hb_030885_020--Hb_003551_040 Hb_004770_060 Hb_004770_060 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_122741_010--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_122741_010--Hb_004907_040 Hb_009803_010 Hb_009803_010 Hb_122741_010--Hb_009803_010 Hb_000134_100 Hb_000134_100 Hb_122741_010--Hb_000134_100 Hb_010367_020 Hb_010367_020 Hb_122741_010--Hb_010367_020 Hb_158296_010 Hb_158296_010 Hb_122741_010--Hb_158296_010 Hb_001916_010--Hb_004907_040 Hb_001916_010--Hb_000134_100 Hb_002108_020 Hb_002108_020 Hb_001916_010--Hb_002108_020 Hb_012675_020 Hb_012675_020 Hb_001916_010--Hb_012675_020 Hb_001916_010--Hb_009803_010 Hb_003551_040--Hb_154381_010 Hb_002311_460 Hb_002311_460 Hb_003551_040--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_003551_040--Hb_001832_220 Hb_003551_040--Hb_012539_090 Hb_000737_020 Hb_000737_020 Hb_003551_040--Hb_000737_020 Hb_154381_010--Hb_002311_460 Hb_154381_010--Hb_001832_220 Hb_154381_010--Hb_012539_090 Hb_154381_010--Hb_000737_020 Hb_012539_090--Hb_001832_220 Hb_012539_090--Hb_002108_020 Hb_012539_090--Hb_004907_040 Hb_012539_090--Hb_000134_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.582693 2.35494 0.226194 1.0876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.253517 0

CAGE analysis