Hb_060618_010

Information

Type -
Description -
Location Contig60618: 78-542
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09870g
description POPTRDRAFT_574149; hypothetical protein
nr
ID XP_012080079.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17198 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060618_010 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_000483_250 0.0989399948 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
3 Hb_000836_140 0.1216718377 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
4 Hb_002248_100 0.1245531197 - - hypothetical protein VITISV_027197 [Vitis vinifera]
5 Hb_001017_070 0.1261248214 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007943_140 0.1337905686 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
7 Hb_010827_020 0.1392786216 - - 60S ribosomal protein L17B [Hevea brasiliensis]
8 Hb_001424_020 0.1441998457 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
9 Hb_001434_070 0.1443551482 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
10 Hb_148909_020 0.1470725223 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000780_210 0.1471887225 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
12 Hb_000365_080 0.1481840269 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
13 Hb_000635_080 0.1486547529 - - 60S ribosomal protein L17A [Hevea brasiliensis]
14 Hb_000613_170 0.1492820049 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
15 Hb_000819_070 0.1493000261 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
16 Hb_000085_330 0.1499112258 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
17 Hb_008887_040 0.1499202757 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
18 Hb_000881_080 0.1508502861 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005211_190 0.1568348361 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
20 Hb_004109_020 0.157204025 - - 60S ribosomal protein L18aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_060618_010 Hb_060618_010 Hb_000483_250 Hb_000483_250 Hb_060618_010--Hb_000483_250 Hb_000836_140 Hb_000836_140 Hb_060618_010--Hb_000836_140 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_000635_080 Hb_000635_080 Hb_002248_100--Hb_000635_080 Hb_002248_100--Hb_007943_140 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_000881_080 Hb_000881_080 Hb_001017_070--Hb_000881_080 Hb_001017_070--Hb_002248_100 Hb_001017_070--Hb_007943_140 Hb_001017_070--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_001017_070--Hb_183086_040 Hb_002918_140 Hb_002918_140 Hb_001017_070--Hb_002918_140 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_010827_020--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33679 2.10659 0.438938 1.29184 2.19672 2.86032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8144 18.0856 3.65433 3.39907 2.29154

CAGE analysis