Hb_060668_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig60668: 3076-3709
Sequence    

Annotation

kegg
ID rcu:RCOM_1593850
description nucleic acid binding protein, putative
nr
ID XP_012071807.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID A0A067L2Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04404 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein indeterminate-domain 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50803: 2624-3711
cDNA
(Sanger)
(ID:Location)		 008_F08.ab1: 2656-3188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060668_010 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_001741_080 0.0660077108 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
3 Hb_004206_030 0.0830432572 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_000041_070 0.0889454818 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
5 Hb_005016_130 0.0917479834 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
6 Hb_001514_180 0.0921609309 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
7 Hb_030765_020 0.096285056 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_003106_140 0.1005551001 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000078_030 0.1093984196 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000284_010 0.1105330097 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_012799_060 0.1113031522 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_002387_060 0.1135763734 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003540_230 0.1153671193 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_006816_440 0.1188331712 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_024505_040 0.1202907468 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
16 Hb_115919_020 0.121010924 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_000444_030 0.1230467952 - - PREDICTED: expansin-A20 [Jatropha curcas]
18 Hb_000580_170 0.1241304698 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
19 Hb_012725_110 0.1250567817 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
20 Hb_002235_230 0.1284707571 - - latex abundant protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_060668_010 Hb_060668_010 Hb_001741_080 Hb_001741_080 Hb_060668_010--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_060668_010--Hb_004206_030 Hb_000041_070 Hb_000041_070 Hb_060668_010--Hb_000041_070 Hb_005016_130 Hb_005016_130 Hb_060668_010--Hb_005016_130 Hb_001514_180 Hb_001514_180 Hb_060668_010--Hb_001514_180 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_001741_080--Hb_005016_130 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_024505_040 Hb_024505_040 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_001514_180--Hb_000444_030 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_030765_020--Hb_012799_060 Hb_030765_020--Hb_000078_030 Hb_030765_020--Hb_001741_080 Hb_000580_170 Hb_000580_170 Hb_030765_020--Hb_000580_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
384.401 16.4944 2.3464 4.2131 169.901 310.71
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
656.605 397.127 418.132 66.6804 0.383363

CAGE analysis