Hb_060809_010

Information

Type -
Description -
Location Contig60809: 4916-13496
Sequence    

Annotation

kegg
ID vvi:100247465
description uncharacterized LOC100247465
nr
ID XP_011080714.1
description PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID D7T2A4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00060 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50875: 4547-13408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060809_010 0.0 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
2 Hb_000317_430 0.0611636041 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
3 Hb_000035_380 0.0651306137 - - -
4 Hb_003125_040 0.07007116 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
5 Hb_003728_020 0.0840425399 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000175_070 0.0840535397 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
7 Hb_003005_020 0.0852635779 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
8 Hb_118419_020 0.0875150331 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
9 Hb_007508_070 0.0880508306 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
10 Hb_002942_020 0.0885474712 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_000365_360 0.0886020028 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_001214_130 0.0902111077 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
13 Hb_007426_230 0.0910550042 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
14 Hb_000032_570 0.0913094401 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_011224_080 0.0915091853 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
16 Hb_002097_110 0.0916026094 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_001518_040 0.0917247493 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
18 Hb_001135_160 0.0921895255 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
19 Hb_004662_030 0.0929813325 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
20 Hb_000160_170 0.0943895082 - - hypothetical protein JCGZ_02506 [Jatropha curcas]

Gene co-expression network

sample Hb_060809_010 Hb_060809_010 Hb_000317_430 Hb_000317_430 Hb_060809_010--Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_060809_010--Hb_000035_380 Hb_003125_040 Hb_003125_040 Hb_060809_010--Hb_003125_040 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_000175_070 Hb_000175_070 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_000175_070 Hb_118419_020 Hb_118419_020 Hb_000317_430--Hb_118419_020 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000035_380--Hb_000365_360 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_002942_020 Hb_002942_020 Hb_003125_040--Hb_002942_020 Hb_006569_020 Hb_006569_020 Hb_003125_040--Hb_006569_020 Hb_000928_240 Hb_000928_240 Hb_003125_040--Hb_000928_240 Hb_003125_040--Hb_000317_430 Hb_003125_040--Hb_118419_020 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_000175_070--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9702 4.44937 2.2517 3.60797 21.4526 22.8249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7051 17.6385 12.7696 7.03865 4.72327

CAGE analysis