Hb_061090_010

Information

Type -
Description -
Location Contig61090: 12001-16078
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07750g
description POPTRDRAFT_557663; RAN BINDING protein 1
nr
ID XP_002313984.1
description RAN BINDING protein 1 [Populus trichocarpa]
swissprot
ID P92985
description Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1
trembl
ID B9HND6
description RAN BINDING protein 1 OS=Populus trichocarpa GN=POPTR_0009s07750g PE=4 SV=1
Gene Ontology
ID GO:0005622
description ran-binding protein 1 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50988: 12134-15915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061090_010 0.0 - - RAN BINDING protein 1 [Populus trichocarpa]
2 Hb_001818_090 0.0551353097 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003615_010 0.0627890098 - - 60S ribosomal protein L8, putative [Ricinus communis]
4 Hb_002026_180 0.0678087204 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
5 Hb_003996_020 0.0686741923 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_019280_040 0.0731691524 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_007441_120 0.0746539412 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
8 Hb_007416_280 0.0758552375 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003766_040 0.0781544608 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004920_120 0.0784079384 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000030_300 0.0802638993 - - Thioredoxin, putative [Ricinus communis]
12 Hb_003175_010 0.0805211617 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
13 Hb_004109_090 0.0808419033 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000579_140 0.0808558137 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_180 0.0830049628 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
16 Hb_003032_040 0.0836391859 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
17 Hb_039946_020 0.0839794505 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002477_330 0.0842153373 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
19 Hb_000120_470 0.0843512786 - - hypothetical protein VITISV_017372 [Vitis vinifera]
20 Hb_002016_110 0.0852330811 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_061090_010 Hb_061090_010 Hb_001818_090 Hb_001818_090 Hb_061090_010--Hb_001818_090 Hb_003615_010 Hb_003615_010 Hb_061090_010--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_003996_020 Hb_003996_020 Hb_061090_010--Hb_003996_020 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_007441_120 Hb_007441_120 Hb_061090_010--Hb_007441_120 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_154648_010 Hb_154648_010 Hb_003996_020--Hb_154648_010 Hb_000010_330 Hb_000010_330 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_007441_120--Hb_005663_060 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_007441_120--Hb_006922_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.1785 34.5377 37.4741 49.9922 64.0103 116.091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5662 95.4719 110.521 79.5822 30.548

CAGE analysis