Hb_061256_020

Information

Type -
Description -
Location Contig61256: 13461-15266
Sequence    

Annotation

kegg
ID rcu:RCOM_1601190
description hypothetical protein
nr
ID XP_012073858.1
description PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
swissprot
ID Q94K98
description UPF0392 protein At1g27200 OS=Arabidopsis thaliana GN=At1g27200 PE=2 SV=2
trembl
ID B9R8P0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061256_020 0.0 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
2 Hb_000343_070 0.0692316665 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
3 Hb_002809_180 0.0728703417 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
4 Hb_001278_120 0.0751862587 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
5 Hb_004943_020 0.0766139997 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_010172_040 0.0791073621 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
7 Hb_004459_010 0.0810916115 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
8 Hb_000103_440 0.0847876987 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
9 Hb_005269_060 0.0866084155 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
10 Hb_000421_040 0.0873353846 - - Peptide transporter, putative [Ricinus communis]
11 Hb_000017_180 0.0911275113 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
12 Hb_143629_170 0.0941757036 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
13 Hb_000392_350 0.0979068721 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004650_110 0.0986896142 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
15 Hb_003855_060 0.1010698699 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
16 Hb_005656_120 0.1011224393 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_128986_010 0.1013925341 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007163_110 0.1017599686 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
19 Hb_049955_010 0.1031763376 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
20 Hb_095744_010 0.1036522498 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_061256_020 Hb_061256_020 Hb_000343_070 Hb_000343_070 Hb_061256_020--Hb_000343_070 Hb_002809_180 Hb_002809_180 Hb_061256_020--Hb_002809_180 Hb_001278_120 Hb_001278_120 Hb_061256_020--Hb_001278_120 Hb_004943_020 Hb_004943_020 Hb_061256_020--Hb_004943_020 Hb_010172_040 Hb_010172_040 Hb_061256_020--Hb_010172_040 Hb_004459_010 Hb_004459_010 Hb_061256_020--Hb_004459_010 Hb_000343_070--Hb_001278_120 Hb_000343_070--Hb_004943_020 Hb_005269_060 Hb_005269_060 Hb_000343_070--Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_000343_070--Hb_049955_010 Hb_000343_070--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000343_070--Hb_000707_090 Hb_002809_180--Hb_010172_040 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_002809_180--Hb_010589_010 Hb_003152_020 Hb_003152_020 Hb_002809_180--Hb_003152_020 Hb_001278_120--Hb_004943_020 Hb_001278_120--Hb_004459_010 Hb_128986_010 Hb_128986_010 Hb_001278_120--Hb_128986_010 Hb_003855_060 Hb_003855_060 Hb_001278_120--Hb_003855_060 Hb_000326_120 Hb_000326_120 Hb_001278_120--Hb_000326_120 Hb_004943_020--Hb_003855_060 Hb_143629_170 Hb_143629_170 Hb_004943_020--Hb_143629_170 Hb_007904_150 Hb_007904_150 Hb_004943_020--Hb_007904_150 Hb_004943_020--Hb_004459_010 Hb_000421_040 Hb_000421_040 Hb_010172_040--Hb_000421_040 Hb_000172_270 Hb_000172_270 Hb_010172_040--Hb_000172_270 Hb_010172_040--Hb_000707_090 Hb_010172_040--Hb_001278_120 Hb_000917_300 Hb_000917_300 Hb_004459_010--Hb_000917_300 Hb_001981_050 Hb_001981_050 Hb_004459_010--Hb_001981_050 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_000318_310 Hb_000318_310 Hb_004459_010--Hb_000318_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00918634 0.248014 0.869902 0 0.00973706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0237733 0.71259

CAGE analysis