Hb_061256_030

Information

Type -
Description -
Location Contig61256: 19156-32068
Sequence    

Annotation

kegg
ID rcu:RCOM_1601180
description receptor serine-threonine protein kinase, putative (EC:2.7.11.25)
nr
ID XP_002510682.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID B9R8N9
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1601180 PE=3 SV=1
Gene Ontology
ID GO:0005622
description kinase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51062: 19348-23198 , PASA_asmbl_51063: 19457-23839 , PASA_asmbl_51064: 30864-31682
cDNA
(Sanger)
(ID:Location)		 005_P20.ab1: 19676-21452 , 015_L20.ab1: 19724-19931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061256_030 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_002837_070 0.0759534672 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
3 Hb_003226_170 0.0828151962 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
4 Hb_003673_020 0.1056645188 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
5 Hb_174865_050 0.1095159526 - - PREDICTED: neuroguidin [Jatropha curcas]
6 Hb_010189_010 0.1154907866 - - -
7 Hb_009421_100 0.1198522762 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
8 Hb_000211_090 0.1228065268 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
9 Hb_007111_040 0.1228583933 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
10 Hb_003540_140 0.1230881515 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
11 Hb_004531_090 0.1234846324 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
12 Hb_012807_120 0.1255831861 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000365_350 0.1266933875 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
14 Hb_113216_010 0.1272126416 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
15 Hb_035360_010 0.1275903305 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_003580_040 0.1280518801 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
17 Hb_000363_340 0.1281236211 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
18 Hb_002025_140 0.1285134097 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_002769_040 0.1297175136 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
20 Hb_000016_180 0.1327361806 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_061256_030 Hb_061256_030 Hb_002837_070 Hb_002837_070 Hb_061256_030--Hb_002837_070 Hb_003226_170 Hb_003226_170 Hb_061256_030--Hb_003226_170 Hb_003673_020 Hb_003673_020 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_113216_010 Hb_113216_010 Hb_002837_070--Hb_113216_010 Hb_002837_070--Hb_010189_010 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_003226_170--Hb_003673_020 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_174865_050--Hb_113216_010 Hb_174865_050--Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_174865_050--Hb_001195_030 Hb_000185_090 Hb_000185_090 Hb_174865_050--Hb_000185_090 Hb_010189_010--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_010189_010--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_010189_010--Hb_000213_060 Hb_005000_270 Hb_005000_270 Hb_010189_010--Hb_005000_270 Hb_002918_070 Hb_002918_070 Hb_010189_010--Hb_002918_070 Hb_007786_010 Hb_007786_010 Hb_009421_100--Hb_007786_010 Hb_002025_140 Hb_002025_140 Hb_009421_100--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_009421_100--Hb_000684_180 Hb_003384_030 Hb_003384_030 Hb_009421_100--Hb_003384_030 Hb_009421_100--Hb_000573_040 Hb_000462_150 Hb_000462_150 Hb_009421_100--Hb_000462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.0535 10.6755 16.3044 9.95334 100.737 122.316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.573 10.7404 22.5546 5.01941 5.62571

CAGE analysis