Hb_061336_010

Information

Type -
Description -
Location Contig61336: 5577-6881
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061336_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000816_180 0.0196810362 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
3 Hb_180535_010 0.0293643185 - - -
4 Hb_007576_090 0.0319466635 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
5 Hb_028486_020 0.0385135824 - - conserved hypothetical protein [Ricinus communis]
6 Hb_072952_010 0.0411854806 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
7 Hb_007218_050 0.0527890854 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000375_100 0.0544062616 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
9 Hb_000010_430 0.0601535151 - - Esterase precursor, putative [Ricinus communis]
10 Hb_007760_060 0.0624890105 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
11 Hb_002307_140 0.0630768588 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
12 Hb_000258_400 0.0686411762 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
13 Hb_002893_220 0.0785127255 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
14 Hb_000127_240 0.0833206707 - - SAUR39 [Populus tomentosa]
15 Hb_006711_030 0.0880406016 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
16 Hb_000496_100 0.0886828751 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
17 Hb_000397_060 0.0889996983 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
18 Hb_000840_080 0.0890846561 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
19 Hb_007044_240 0.0912060021 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
20 Hb_000073_040 0.094489965 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_061336_010 Hb_061336_010 Hb_000816_180 Hb_000816_180 Hb_061336_010--Hb_000816_180 Hb_180535_010 Hb_180535_010 Hb_061336_010--Hb_180535_010 Hb_007576_090 Hb_007576_090 Hb_061336_010--Hb_007576_090 Hb_028486_020 Hb_028486_020 Hb_061336_010--Hb_028486_020 Hb_072952_010 Hb_072952_010 Hb_061336_010--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_061336_010--Hb_007218_050 Hb_000816_180--Hb_180535_010 Hb_000816_180--Hb_007576_090 Hb_000816_180--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_000816_180--Hb_002307_140 Hb_000816_180--Hb_072952_010 Hb_180535_010--Hb_007576_090 Hb_180535_010--Hb_007218_050 Hb_180535_010--Hb_002307_140 Hb_180535_010--Hb_072952_010 Hb_007760_060 Hb_007760_060 Hb_007576_090--Hb_007760_060 Hb_007576_090--Hb_072952_010 Hb_007576_090--Hb_007218_050 Hb_028486_020--Hb_000816_180 Hb_000496_100 Hb_000496_100 Hb_028486_020--Hb_000496_100 Hb_028486_020--Hb_072952_010 Hb_000375_100 Hb_000375_100 Hb_028486_020--Hb_000375_100 Hb_028486_020--Hb_007576_090 Hb_072952_010--Hb_000375_100 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400 Hb_007218_050--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_007218_050--Hb_006711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.260025 0.115743 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0600563

CAGE analysis