Hb_061365_010

Information

Type -
Description -
Location Contig61365: 1879-3036
Sequence    

Annotation

kegg
ID vvi:104878882
description uncharacterized LOC104878882
nr
ID XP_009778385.1
description PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061365_010 0.0 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
2 Hb_137515_010 0.031362167 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
3 Hb_053643_010 0.1424345143 - - Zinc finger protein GIS2 [Medicago truncatula]
4 Hb_009922_010 0.1654909138 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_093432_020 0.2126237443 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
6 Hb_002928_070 0.2262549747 - - -
7 Hb_005203_050 0.2407136526 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_002986_120 0.2732976579 - - -
9 Hb_089341_010 0.2775467132 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
10 Hb_178613_010 0.2812606872 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_032018_010 0.2867764624 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
12 Hb_000062_500 0.2902464813 - - PREDICTED: urease-like [Zea mays]
13 Hb_009686_010 0.3021813077 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
14 Hb_001279_230 0.3110457757 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
15 Hb_003647_120 0.3215638249 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
16 Hb_027255_010 0.3257345613 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
17 Hb_001723_110 0.3271438271 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
18 Hb_006634_010 0.3391474477 - - -
19 Hb_009189_030 0.3400206404 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
20 Hb_003337_070 0.3402134477 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]

Gene co-expression network

sample Hb_061365_010 Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_061365_010--Hb_137515_010 Hb_053643_010 Hb_053643_010 Hb_061365_010--Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_061365_010--Hb_009922_010 Hb_093432_020 Hb_093432_020 Hb_061365_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_061365_010--Hb_002928_070 Hb_005203_050 Hb_005203_050 Hb_061365_010--Hb_005203_050 Hb_137515_010--Hb_053643_010 Hb_137515_010--Hb_009922_010 Hb_137515_010--Hb_093432_020 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070 Hb_053643_010--Hb_009922_010 Hb_053643_010--Hb_093432_020 Hb_053643_010--Hb_002928_070 Hb_001279_230 Hb_001279_230 Hb_053643_010--Hb_001279_230 Hb_009922_010--Hb_093432_020 Hb_009922_010--Hb_002928_070 Hb_009922_010--Hb_005203_050 Hb_093432_020--Hb_002928_070 Hb_004108_010 Hb_004108_010 Hb_093432_020--Hb_004108_010 Hb_002928_070--Hb_004108_010 Hb_002928_070--Hb_001279_230 Hb_000062_500 Hb_000062_500 Hb_005203_050--Hb_000062_500 Hb_032018_010 Hb_032018_010 Hb_005203_050--Hb_032018_010 Hb_033926_010 Hb_033926_010 Hb_005203_050--Hb_033926_010 Hb_009189_030 Hb_009189_030 Hb_005203_050--Hb_009189_030 Hb_005203_050--Hb_053643_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0199003 0 0 0.0199369 0.0349807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis