Hb_061783_010

Information

Type -
Description -
Location Contig61783: 1131-1454
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02820g
description POPTRDRAFT_834500; hypothetical protein
nr
ID XP_011023530.1
description PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I7Z8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061783_010 0.0 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
2 Hb_004450_090 0.0836639618 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_004102_200 0.0945394318 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
4 Hb_029238_040 0.0997013978 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
5 Hb_007545_220 0.1042224026 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
6 Hb_156850_050 0.1063888121 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
7 Hb_000984_110 0.1077232794 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
8 Hb_000983_130 0.1078294745 - - transcription factor, putative [Ricinus communis]
9 Hb_001680_050 0.1121320709 - - -
10 Hb_007579_030 0.1134248541 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_000953_110 0.1134294686 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
12 Hb_080601_010 0.1155135012 - - metallothionein 3-like protein [Hevea brasiliensis]
13 Hb_000197_260 0.1282431305 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
14 Hb_000000_260 0.1316800423 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
15 Hb_029665_010 0.1337498264 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_000317_170 0.1340222701 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_001498_050 0.1373951207 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
18 Hb_017700_030 0.1387306003 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
19 Hb_005048_090 0.140718054 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
20 Hb_180980_010 0.1416503008 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]

Gene co-expression network

sample Hb_061783_010 Hb_061783_010 Hb_004450_090 Hb_004450_090 Hb_061783_010--Hb_004450_090 Hb_004102_200 Hb_004102_200 Hb_061783_010--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_061783_010--Hb_029238_040 Hb_007545_220 Hb_007545_220 Hb_061783_010--Hb_007545_220 Hb_156850_050 Hb_156850_050 Hb_061783_010--Hb_156850_050 Hb_000984_110 Hb_000984_110 Hb_061783_010--Hb_000984_110 Hb_000983_130 Hb_000983_130 Hb_004450_090--Hb_000983_130 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_004450_090--Hb_004102_200 Hb_004450_090--Hb_029238_040 Hb_000000_260 Hb_000000_260 Hb_004450_090--Hb_000000_260 Hb_004102_200--Hb_000983_130 Hb_004102_200--Hb_029238_040 Hb_152277_010 Hb_152277_010 Hb_004102_200--Hb_152277_010 Hb_004102_200--Hb_156850_050 Hb_029238_040--Hb_156850_050 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_029238_040--Hb_000983_130 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_000953_110 Hb_000953_110 Hb_007545_220--Hb_000953_110 Hb_000197_260 Hb_000197_260 Hb_007545_220--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_007545_220--Hb_000599_160 Hb_005588_050 Hb_005588_050 Hb_007545_220--Hb_005588_050 Hb_004158_040 Hb_004158_040 Hb_007545_220--Hb_004158_040 Hb_010217_020 Hb_010217_020 Hb_007545_220--Hb_010217_020 Hb_156850_050--Hb_007579_030 Hb_156850_050--Hb_001401_120 Hb_000096_050 Hb_000096_050 Hb_156850_050--Hb_000096_050 Hb_005048_090 Hb_005048_090 Hb_000984_110--Hb_005048_090 Hb_000230_550 Hb_000230_550 Hb_000984_110--Hb_000230_550 Hb_001295_050 Hb_001295_050 Hb_000984_110--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_000984_110--Hb_000172_070 Hb_000984_110--Hb_004102_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.4389 2.45634 36.1303 0 0.365282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.222761 12.9826

CAGE analysis