Hb_061908_010

Information

Type -
Description -
Location Contig61908: 3134-4989
Sequence    

Annotation

kegg
ID tcc:TCM_005835
description F-box family protein with WD40/YVTN repeat doamin isoform 2
nr
ID KDP43603.1
description hypothetical protein JCGZ_16890 [Jatropha curcas]
swissprot
ID Q9SV01
description F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2
trembl
ID A0A067L8N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061908_010 0.0 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
2 Hb_123475_010 0.0652492354 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
3 Hb_000956_030 0.0691169946 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
4 Hb_001158_220 0.0732360965 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_000120_500 0.0792638193 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
6 Hb_002475_160 0.0805024257 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
7 Hb_001009_040 0.08429977 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
8 Hb_000866_030 0.0845879699 - - hypothetical protein RCOM_1615820 [Ricinus communis]
9 Hb_000997_060 0.0862696869 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
10 Hb_005016_170 0.0863524024 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003602_040 0.0890298092 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_000645_150 0.0910093958 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000236_370 0.091365619 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
14 Hb_009118_010 0.0921146011 - - methionine aminopeptidase, putative [Ricinus communis]
15 Hb_003434_060 0.0925005286 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
16 Hb_002232_170 0.0926380542 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
17 Hb_000176_110 0.0932692102 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
18 Hb_006913_040 0.0947144669 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
19 Hb_003656_140 0.0952985776 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
20 Hb_007317_190 0.0962058333 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_061908_010 Hb_061908_010 Hb_123475_010 Hb_123475_010 Hb_061908_010--Hb_123475_010 Hb_000956_030 Hb_000956_030 Hb_061908_010--Hb_000956_030 Hb_001158_220 Hb_001158_220 Hb_061908_010--Hb_001158_220 Hb_000120_500 Hb_000120_500 Hb_061908_010--Hb_000120_500 Hb_002475_160 Hb_002475_160 Hb_061908_010--Hb_002475_160 Hb_001009_040 Hb_001009_040 Hb_061908_010--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_123475_010--Hb_000169_010 Hb_001124_210 Hb_001124_210 Hb_123475_010--Hb_001124_210 Hb_185830_020 Hb_185830_020 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_123475_010--Hb_000956_030 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_001158_220--Hb_002475_160 Hb_007643_050 Hb_007643_050 Hb_001158_220--Hb_007643_050 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_000120_500--Hb_004198_010 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080 Hb_001009_040--Hb_000169_010 Hb_005389_150 Hb_005389_150 Hb_001009_040--Hb_005389_150 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4018 5.29661 3.44592 5.85529 14.0528 23.8555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0702 9.30235 5.27626 7.72034 2.48882

CAGE analysis