Hb_062006_010

Information

Type -
Description -
Location Contig62006: 6476-7375
Sequence    

Annotation

kegg
ID pda:103700405
description uncharacterized LOC103700405
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062006_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_007101_010 0.2003853639 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
3 Hb_002272_010 0.2784874749 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002180_010 0.2949478011 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_170207_010 0.2966102322 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
6 Hb_004296_020 0.2992239492 - - unnamed protein product [Coffea canephora]
7 Hb_007181_040 0.3228257527 - - -
8 Hb_021888_050 0.3289525168 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
9 Hb_009222_020 0.3354787388 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
10 Hb_006922_060 0.3370306725 - - calcineurin B, putative [Ricinus communis]
11 Hb_003018_070 0.3372637536 - - SAUR family protein, partial [Theobroma cacao]
12 Hb_001022_040 0.337332195 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
13 Hb_117240_010 0.3385162913 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
14 Hb_000224_100 0.338968948 - - -
15 Hb_000649_240 0.3395384783 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
16 Hb_007951_130 0.3401359096 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
17 Hb_021888_120 0.3402233478 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
18 Hb_006120_110 0.3410790514 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007451_060 0.341362061 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
20 Hb_003225_030 0.3417540258 - - Pectinesterase-4 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_062006_010 Hb_062006_010 Hb_007101_010 Hb_007101_010 Hb_062006_010--Hb_007101_010 Hb_002272_010 Hb_002272_010 Hb_062006_010--Hb_002272_010 Hb_002180_010 Hb_002180_010 Hb_062006_010--Hb_002180_010 Hb_170207_010 Hb_170207_010 Hb_062006_010--Hb_170207_010 Hb_004296_020 Hb_004296_020 Hb_062006_010--Hb_004296_020 Hb_007181_040 Hb_007181_040 Hb_062006_010--Hb_007181_040 Hb_007101_010--Hb_007181_040 Hb_082730_010 Hb_082730_010 Hb_007101_010--Hb_082730_010 Hb_000612_040 Hb_000612_040 Hb_007101_010--Hb_000612_040 Hb_000224_100 Hb_000224_100 Hb_007101_010--Hb_000224_100 Hb_056559_010 Hb_056559_010 Hb_007101_010--Hb_056559_010 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_009233_030 Hb_009233_030 Hb_002272_010--Hb_009233_030 Hb_000256_130 Hb_000256_130 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240 Hb_117240_010 Hb_117240_010 Hb_002180_010--Hb_117240_010 Hb_000829_080 Hb_000829_080 Hb_002180_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_002180_010--Hb_010288_040 Hb_006922_060 Hb_006922_060 Hb_002180_010--Hb_006922_060 Hb_003398_030 Hb_003398_030 Hb_002180_010--Hb_003398_030 Hb_008289_050 Hb_008289_050 Hb_002180_010--Hb_008289_050 Hb_007451_060 Hb_007451_060 Hb_170207_010--Hb_007451_060 Hb_170207_010--Hb_002180_010 Hb_111347_010 Hb_111347_010 Hb_170207_010--Hb_111347_010 Hb_002014_110 Hb_002014_110 Hb_170207_010--Hb_002014_110 Hb_002615_100 Hb_002615_100 Hb_170207_010--Hb_002615_100 Hb_033772_050 Hb_033772_050 Hb_004296_020--Hb_033772_050 Hb_005701_030 Hb_005701_030 Hb_004296_020--Hb_005701_030 Hb_001364_030 Hb_001364_030 Hb_004296_020--Hb_001364_030 Hb_000363_140 Hb_000363_140 Hb_004296_020--Hb_000363_140 Hb_000692_020 Hb_000692_020 Hb_004296_020--Hb_000692_020 Hb_004129_150 Hb_004129_150 Hb_004296_020--Hb_004129_150 Hb_008096_040 Hb_008096_040 Hb_007181_040--Hb_008096_040 Hb_006120_110 Hb_006120_110 Hb_007181_040--Hb_006120_110 Hb_001195_080 Hb_001195_080 Hb_007181_040--Hb_001195_080 Hb_000826_060 Hb_000826_060 Hb_007181_040--Hb_000826_060 Hb_000538_150 Hb_000538_150 Hb_007181_040--Hb_000538_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0524299 0.0876884 0 0.0429476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0601978 0.0946771 0 0.0382139 0

CAGE analysis