Hb_062135_010

Information

Type -
Description -
Location Contig62135: 958-2284
Sequence    

Annotation

kegg
ID pop:POPTR_0011s036602
description hypothetical protein
nr
ID XP_006377277.1
description hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FY67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s036602g PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062135_010 0.0 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
2 Hb_000359_240 0.0127717884 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
3 Hb_001377_390 0.1199786091 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
4 Hb_014556_020 0.1264287205 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000252_140 0.1675642569 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_010320_030 0.1814610858 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_085636_010 0.2480891025 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
8 Hb_003554_020 0.278661331 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
9 Hb_021943_030 0.3307486126 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000025_130 0.3309069202 - - -
11 Hb_002046_030 0.3608659966 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
12 Hb_069868_010 0.3624005822 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
13 Hb_002641_110 0.3655041187 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
14 Hb_000317_360 0.3699295814 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
15 Hb_012094_030 0.3724228271 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
16 Hb_010803_010 0.3725485571 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_001995_020 0.3821708902 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
18 Hb_005063_070 0.3931753226 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
19 Hb_172503_010 0.4135603229 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
20 Hb_103832_030 0.4135644212 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_062135_010 Hb_062135_010 Hb_000359_240 Hb_000359_240 Hb_062135_010--Hb_000359_240 Hb_001377_390 Hb_001377_390 Hb_062135_010--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_062135_010--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_062135_010--Hb_000252_140 Hb_010320_030 Hb_010320_030 Hb_062135_010--Hb_010320_030 Hb_085636_010 Hb_085636_010 Hb_062135_010--Hb_085636_010 Hb_000359_240--Hb_001377_390 Hb_000359_240--Hb_014556_020 Hb_000359_240--Hb_000252_140 Hb_000359_240--Hb_010320_030 Hb_000359_240--Hb_085636_010 Hb_001377_390--Hb_014556_020 Hb_001377_390--Hb_000252_140 Hb_003554_020 Hb_003554_020 Hb_001377_390--Hb_003554_020 Hb_001377_390--Hb_010320_030 Hb_014556_020--Hb_000252_140 Hb_014556_020--Hb_003554_020 Hb_014556_020--Hb_010320_030 Hb_069868_010 Hb_069868_010 Hb_000252_140--Hb_069868_010 Hb_000252_140--Hb_003554_020 Hb_010320_030--Hb_085636_010 Hb_000317_360 Hb_000317_360 Hb_010320_030--Hb_000317_360 Hb_085636_010--Hb_000317_360 Hb_000496_090 Hb_000496_090 Hb_085636_010--Hb_000496_090 Hb_001369_280 Hb_001369_280 Hb_085636_010--Hb_001369_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0595971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0754349 0 0.0617487 0

CAGE analysis