Hb_062135_020

Information

Type -
Description -
Location Contig62135: 4171-6930
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01310g
description POPTRDRAFT_737128; hypothetical protein
nr
ID XP_009804709.1
description PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
swissprot
ID Q9C944
description Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1
trembl
ID B9IKT5
description Histone H2A OS=Populus trichocarpa GN=POPTR_0018s01310g PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone h2a variant 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51521: 5196-6831
cDNA
(Sanger)
(ID:Location)		 017_G16.ab1: 5266-6831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062135_020 0.0 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
2 Hb_002518_290 0.0769880149 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
3 Hb_005000_180 0.0842488162 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
4 Hb_000123_160 0.0948631417 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_000976_250 0.098672142 - - -
6 Hb_000236_150 0.1014494118 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_000302_290 0.1031580628 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
8 Hb_005914_200 0.1078987415 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
9 Hb_003086_060 0.1082354329 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
10 Hb_001240_020 0.1142632544 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
11 Hb_000239_030 0.1147055047 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
12 Hb_000001_070 0.1177600491 - - -
13 Hb_012539_020 0.1186717198 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
14 Hb_032969_030 0.1195603397 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_146225_010 0.1205868338 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
16 Hb_120823_010 0.1215527163 - - -
17 Hb_000300_390 0.1215900318 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_103118_020 0.1217549172 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
19 Hb_002719_080 0.1238567462 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
20 Hb_001780_050 0.1244513334 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]

Gene co-expression network

sample Hb_062135_020 Hb_062135_020 Hb_002518_290 Hb_002518_290 Hb_062135_020--Hb_002518_290 Hb_005000_180 Hb_005000_180 Hb_062135_020--Hb_005000_180 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_000976_250 Hb_000976_250 Hb_062135_020--Hb_000976_250 Hb_000236_150 Hb_000236_150 Hb_062135_020--Hb_000236_150 Hb_000302_290 Hb_000302_290 Hb_062135_020--Hb_000302_290 Hb_002518_290--Hb_000976_250 Hb_012539_020 Hb_012539_020 Hb_002518_290--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_000976_250--Hb_005914_200 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000976_250--Hb_000300_390 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_147752_010 Hb_147752_010 Hb_000302_290--Hb_147752_010 Hb_000302_290--Hb_002518_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36488 4.85295 8.38632 13.3657 6.89289 13.7338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.2876 111.045 64.2608 24.4986 13.303

CAGE analysis