Hb_062135_030

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig62135: 8404-14990
Sequence    

Annotation

kegg
ID rcu:RCOM_1053880
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID XP_002514364.1
description 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
swissprot
ID O22567
description 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2
trembl
ID B9RK10
description 1-deoxyxylulose-5-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1053880 PE=3 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51522: 8328-8784 , PASA_asmbl_51523: 9003-9610 , PASA_asmbl_51524: 9611-15069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062135_030 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
2 Hb_001141_020 0.072170641 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_000020_190 0.075960727 - - hypothetical protein RCOM_0452240 [Ricinus communis]
4 Hb_001124_160 0.0762529974 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_009467_060 0.0764651518 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
6 Hb_002496_010 0.0781914968 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
7 Hb_001198_100 0.0796696609 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
8 Hb_000521_080 0.0804778736 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
9 Hb_004619_030 0.0838389086 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
10 Hb_023344_120 0.0843049948 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
11 Hb_188063_020 0.0846737551 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000976_300 0.0850414067 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
13 Hb_000172_290 0.0865953886 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
14 Hb_000676_250 0.0888790684 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
15 Hb_000212_330 0.0901881026 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_004055_030 0.0912671843 - - casein kinase, putative [Ricinus communis]
17 Hb_005269_070 0.0916142048 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
18 Hb_007044_140 0.0921381163 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
19 Hb_009548_020 0.0921814414 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_028089_010 0.0927099875 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_062135_030 Hb_062135_030 Hb_001141_020 Hb_001141_020 Hb_062135_030--Hb_001141_020 Hb_000020_190 Hb_000020_190 Hb_062135_030--Hb_000020_190 Hb_001124_160 Hb_001124_160 Hb_062135_030--Hb_001124_160 Hb_009467_060 Hb_009467_060 Hb_062135_030--Hb_009467_060 Hb_002496_010 Hb_002496_010 Hb_062135_030--Hb_002496_010 Hb_001198_100 Hb_001198_100 Hb_062135_030--Hb_001198_100 Hb_001141_020--Hb_009467_060 Hb_188063_020 Hb_188063_020 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_004055_030 Hb_004055_030 Hb_001124_160--Hb_004055_030 Hb_000166_110 Hb_000166_110 Hb_001124_160--Hb_000166_110 Hb_002374_050 Hb_002374_050 Hb_001124_160--Hb_002374_050 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_009467_060--Hb_003025_110 Hb_001199_020 Hb_001199_020 Hb_009467_060--Hb_001199_020 Hb_002271_030 Hb_002271_030 Hb_009467_060--Hb_002271_030 Hb_000025_110 Hb_000025_110 Hb_009467_060--Hb_000025_110 Hb_001006_140 Hb_001006_140 Hb_009467_060--Hb_001006_140 Hb_000976_300 Hb_000976_300 Hb_002496_010--Hb_000976_300 Hb_007479_040 Hb_007479_040 Hb_002496_010--Hb_007479_040 Hb_000028_480 Hb_000028_480 Hb_002496_010--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_002496_010--Hb_002849_100 Hb_002044_150 Hb_002044_150 Hb_002496_010--Hb_002044_150 Hb_002600_150 Hb_002600_150 Hb_002496_010--Hb_002600_150 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.589 5.77315 6.02378 6.92604 7.23903 11.0242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.29 7.07218 11.1236 8.60359 9.11116

CAGE analysis