Hb_062192_030

Information

Type -
Description -
Location Contig62192: 20373-21026
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp34
description rps1; ribosomal protein S1
nr
ID BAO50885.1
description ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
swissprot
ID P26863
description Ribosomal protein S1, mitochondrial OS=Marchantia polymorpha GN=RPS1 PE=3 SV=2
trembl
ID W6JQD3
description Ribosomal protein S1 OS=Hevea brasiliensis GN=rps1 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51535: 18615-19779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062192_030 0.0 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
2 Hb_189099_020 0.1039829583 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
3 Hb_041813_030 0.1061720658 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
4 Hb_042463_070 0.1272384726 - - 60S ribosomal protein L16, putative [Ricinus communis]
5 Hb_001338_080 0.1304517851 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
6 Hb_006040_160 0.131625627 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
7 Hb_034168_070 0.1326897101 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
8 Hb_088080_030 0.1364357788 - - ribosomal protein S4 [Hevea brasiliensis]
9 Hb_034168_010 0.1393909032 - - hypothetical protein [Azospirillum sp. CAG:260]
10 Hb_077242_020 0.1398553002 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
11 Hb_062273_010 0.1408980057 - - ATP synthase F0 subunit 9 [Chara vulgaris]
12 Hb_072212_020 0.1412157931 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
13 Hb_156746_010 0.1446122117 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
14 Hb_102602_010 0.1509563869 - - orf175 (mitochondrion) [Panax ginseng]
15 Hb_051924_010 0.1548538797 - - BnaA01g34100D [Brassica napus]
16 Hb_000920_020 0.1562116024 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
17 Hb_002551_030 0.1582892403 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
18 Hb_003125_100 0.1631791826 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
19 Hb_005154_090 0.1657649683 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_141708_010 0.1660111206 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_062192_030 Hb_062192_030 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_088080_030 Hb_088080_030 Hb_189099_020--Hb_088080_030 Hb_034168_010 Hb_034168_010 Hb_189099_020--Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_189099_020--Hb_000920_020 Hb_189099_020--Hb_041813_030 Hb_189099_020--Hb_001338_080 Hb_041813_030--Hb_042463_070 Hb_156746_010 Hb_156746_010 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_077242_020 Hb_042463_070--Hb_013420_050 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_001338_080--Hb_182972_020 Hb_019253_040 Hb_019253_040 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060 Hb_006040_160--Hb_041813_030 Hb_006040_160--Hb_042463_070 Hb_006040_160--Hb_077242_020 Hb_006040_160--Hb_001338_080 Hb_006040_160--Hb_141708_010 Hb_034168_070--Hb_156746_010 Hb_042463_020 Hb_042463_020 Hb_034168_070--Hb_042463_020 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.358666 0.5534 0.530644 0.940231 0.0773839 0.348847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0890484 0 0.743273 0.399985 18.6607

CAGE analysis