Hb_062226_070

Information

Type transcription factor
Description TF Family: FAR1
Location Contig62226: 35967-39278
Sequence    

Annotation

kegg
ID pop:POPTR_0003s22300g
description POPTRDRAFT_415597; hypothetical protein
nr
ID XP_012088428.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
swissprot
ID Q6NQJ7
description Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2
trembl
ID A0A067LJM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01365 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51599: 35829-43643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_070 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
2 Hb_003494_020 0.0588637896 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
3 Hb_000028_130 0.0593066179 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
4 Hb_000174_270 0.0615723024 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
5 Hb_004079_060 0.0618631732 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
6 Hb_001999_290 0.0623533877 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
7 Hb_005582_040 0.0726838685 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
8 Hb_000181_340 0.0750811566 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_004374_110 0.0759692866 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
10 Hb_012632_010 0.0769825972 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
11 Hb_002234_170 0.0772987523 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
12 Hb_002818_030 0.0774091821 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
13 Hb_011671_410 0.078388181 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
14 Hb_001635_120 0.0786462601 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
15 Hb_004916_010 0.0800202961 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
16 Hb_000672_040 0.0806453498 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
17 Hb_005736_020 0.0813365851 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
18 Hb_066920_030 0.0813735166 - - PREDICTED: adagio protein 1 [Jatropha curcas]
19 Hb_001488_180 0.0815448394 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
20 Hb_031042_050 0.0817074322 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]

Gene co-expression network

sample Hb_062226_070 Hb_062226_070 Hb_003494_020 Hb_003494_020 Hb_062226_070--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_062226_070--Hb_000028_130 Hb_000174_270 Hb_000174_270 Hb_062226_070--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_062226_070--Hb_004079_060 Hb_001999_290 Hb_001999_290 Hb_062226_070--Hb_001999_290 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_000174_270--Hb_001999_290 Hb_000174_270--Hb_000028_130 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_000174_270--Hb_001635_120 Hb_004079_060--Hb_001999_290 Hb_000473_110 Hb_000473_110 Hb_004079_060--Hb_000473_110 Hb_004079_060--Hb_000258_160 Hb_004079_060--Hb_000174_270 Hb_004079_060--Hb_003494_020 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_005582_040--Hb_001635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35827 9.7741 5.03182 6.4737 5.71377 6.31091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64583 5.99715 8.32139 5.80632 9.55335

CAGE analysis