Hb_062226_130

Information

Type -
Description -
Location Contig62226: 83760-87830
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06110g
description POPTRDRAFT_832567; type 1 protein phosphatase-1
nr
ID XP_012088399.1
description PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
swissprot
ID P48484
description Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=1 SV=1
trembl
ID A0A067L8Y8
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_01367 PE=3 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51603: 83849-87768 , PASA_asmbl_51604: 84199-84604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_130 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
2 Hb_000738_020 0.0399179371 - - zinc finger protein, putative [Ricinus communis]
3 Hb_005162_090 0.0553550014 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
4 Hb_000365_230 0.0570972258 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
5 Hb_164010_040 0.0575636871 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_003849_110 0.0626613208 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
7 Hb_003428_010 0.0628624457 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
8 Hb_003861_060 0.063216888 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_000392_420 0.0634984735 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
10 Hb_013358_040 0.0657865684 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
11 Hb_000029_060 0.0679157438 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
12 Hb_000869_080 0.0688297059 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
13 Hb_164390_010 0.069789607 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
14 Hb_002073_200 0.0700835152 - - Phosphatase 2A-2 [Theobroma cacao]
15 Hb_010578_080 0.070126765 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
16 Hb_000347_250 0.0705642602 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
17 Hb_000484_130 0.070942172 - - splicing factor, putative [Ricinus communis]
18 Hb_012022_040 0.0733135968 - - Protein SIS1, putative [Ricinus communis]
19 Hb_009296_070 0.0738216338 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
20 Hb_003878_090 0.0738354266 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]

Gene co-expression network

sample Hb_062226_130 Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_012239_020 Hb_012239_020 Hb_000738_020--Hb_012239_020 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_000738_020--Hb_005162_090 Hb_000738_020--Hb_003849_110 Hb_000869_080 Hb_000869_080 Hb_000738_020--Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190 Hb_164390_010 Hb_164390_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_164010_040--Hb_000869_080 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_164010_040--Hb_002073_200 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3443 14.184 15.5403 15.0663 7.55114 8.43934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2937 15.7325 12.2137 10.1625 11.2938

CAGE analysis