Hb_062226_140

Information

Type -
Description -
Location Contig62226: 89707-96658
Sequence    

Annotation

kegg
ID pmum:103332535
description protein NEDD1
nr
ID XP_012088447.1
description PREDICTED: protein NEDD1 [Jatropha curcas]
swissprot
ID Q3B7M6
description Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1
trembl
ID A0A067LCA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01368 PE=4 SV=1
Gene Ontology
ID GO:0044699
description protein nedd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51605: 89762-90500 , PASA_asmbl_51606: 95447-95853 , PASA_asmbl_51607: 95565-95663 , PASA_asmbl_51608: 95891-96644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_140 0.0 - - PREDICTED: protein NEDD1 [Jatropha curcas]
2 Hb_000342_100 0.0769709619 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
3 Hb_000207_400 0.0858746529 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
4 Hb_000331_470 0.0891835891 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
5 Hb_005391_040 0.0903019662 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
6 Hb_000465_390 0.0940460441 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
7 Hb_000111_380 0.0977949713 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
8 Hb_150651_040 0.103597947 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
9 Hb_002805_220 0.1036789576 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
10 Hb_007928_030 0.1039683929 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
11 Hb_000110_250 0.104505095 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
12 Hb_002601_110 0.1052083448 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
13 Hb_000529_030 0.1055963364 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004734_040 0.106767243 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
15 Hb_001269_610 0.1070735693 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
16 Hb_001863_430 0.1072721339 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_012506_050 0.1072787684 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Jatropha curcas]
18 Hb_001140_370 0.107871199 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
19 Hb_007894_060 0.1086197296 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
20 Hb_007875_030 0.10915313 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]

Gene co-expression network

sample Hb_062226_140 Hb_062226_140 Hb_000342_100 Hb_000342_100 Hb_062226_140--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_062226_140--Hb_000207_400 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_005391_040 Hb_005391_040 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_002893_050 Hb_002893_050 Hb_000342_100--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_008695_050 Hb_008695_050 Hb_000207_400--Hb_008695_050 Hb_002805_220 Hb_002805_220 Hb_000207_400--Hb_002805_220 Hb_001047_240 Hb_001047_240 Hb_000207_400--Hb_001047_240 Hb_000212_290 Hb_000212_290 Hb_000207_400--Hb_000212_290 Hb_000207_400--Hb_005391_040 Hb_000525_020 Hb_000525_020 Hb_000331_470--Hb_000525_020 Hb_003787_010 Hb_003787_010 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_001863_430 Hb_001863_430 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_150651_040 Hb_150651_040 Hb_005391_040--Hb_150651_040 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_089995_010 Hb_089995_010 Hb_005391_040--Hb_089995_010 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_005391_040--Hb_000465_390 Hb_001386_040 Hb_001386_040 Hb_000465_390--Hb_001386_040 Hb_006693_020 Hb_006693_020 Hb_000465_390--Hb_006693_020 Hb_000431_170 Hb_000431_170 Hb_000465_390--Hb_000431_170 Hb_000465_390--Hb_001863_430 Hb_000529_030 Hb_000529_030 Hb_000465_390--Hb_000529_030 Hb_000948_160 Hb_000948_160 Hb_000465_390--Hb_000948_160 Hb_005731_050 Hb_005731_050 Hb_000111_380--Hb_005731_050 Hb_004108_070 Hb_004108_070 Hb_000111_380--Hb_004108_070 Hb_002601_110 Hb_002601_110 Hb_000111_380--Hb_002601_110 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_000111_380--Hb_001140_370 Hb_033594_120 Hb_033594_120 Hb_000111_380--Hb_033594_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91218 3.5071 4.15736 5.6246 3.5277 4.95696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.95944 9.39061 2.40747 4.64016 3.41281

CAGE analysis